Consensus taxonomy: Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria
from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase
contig | # features | sequence size | GC content (%) | Cov | Coding Density (%) | |
---|---|---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_36954
Species:
Shinella sp. DD12 (100%)
|
2 | 1255 bp | 65.58 | 3.19 | 92.27 | |
SCNpilot_expt_1000_bf_scaffold_4603
Species:
Shinella sp. DD12 (93.75%)
|
16 | 14063 bp | 65.94 | 5.49 | 92.31 | |
SCNpilot_expt_1000_bf_scaffold_66437
Species:
Shinella sp. DD12 (100%)
|
2 | 1129 bp | 68.38 | 3.54 | 92.47 | |
SCNpilot_expt_1000_bf_scaffold_63147
Species:
Shinella sp. DD12 (75%)
|
4 | 1122 bp | 60.16 | 3.57 | 92.51 | |
SCNpilot_expt_1000_bf_scaffold_11045
Species:
Shinella sp. DD12 (100%)
|
6 | 4074 bp | 68.04 | 6.63 | 92.56 | |
SCNpilot_expt_1000_bf_scaffold_39264
Species:
Shinella sp. DD12 (100%)
|
1 | 1189 bp | 65.35 | 5.05 | 92.60 | |
SCNpilot_expt_1000_bf_scaffold_4928
Species:
Shinella sp. DD12 (77.78%)
|
9 | 9006 bp | 64.95 | 8.02 | 92.60 | |
SCNpilot_expt_1000_bf_scaffold_3649
Species:
Shinella sp. DD12 (93.33%)
|
30 | 29604 bp | 66.19 | 7.24 | 92.63 | |
SCNpilot_expt_1000_bf_scaffold_43487
Species:
Shinella sp. DD12 (100%)
|
1 | 1064 bp | 68.80 | 6.34 | 92.76 | |
SCNpilot_expt_1000_bf_scaffold_66190
Species:
Shinella sp. DD12 (50%)
|
2 | 1041 bp | 66.76 | 7.20 | 92.80 | |
SCNpilot_expt_1000_bf_scaffold_15364
Species:
Shinella sp. DD12 (100%)
|
2 | 2614 bp | 68.36 | 7.56 | 92.85 | |
SCNpilot_expt_1000_bf_scaffold_27632
Species:
Shinella sp. DD12 (100%)
|
2 | 1598 bp | 66.90 | 3.29 | 92.93 | |
SCNpilot_expt_1000_bf_scaffold_9351
Species:
Shinella sp. DD12 (88.89%)
|
9 | 11976 bp | 66.48 | 6.76 | 92.94 | |
SCNpilot_expt_1000_bf_scaffold_27579
Species:
Shinella sp. DD12 (100%)
|
2 | 1601 bp | 62.96 | 3.75 | 92.94 | |
SCNpilot_expt_1000_bf_scaffold_17097
Order:
Rhizobiales (66.67%)
|
6 | 9557 bp | 65.09 | 5.91 | 92.95 | |
SCNpilot_expt_1000_bf_scaffold_7237
Class:
Alphaproteobacteria (52.38%)
|
21 | 20412 bp | 63.14 | 5.77 | 93.03 | |
SCNpilot_expt_1000_bf_scaffold_3775
Species:
Shinella sp. DD12 (90%)
|
10 | 10858 bp | 68.71 | 6.01 | 93.06 | |
SCNpilot_expt_1000_bf_scaffold_43007
Species:
Shinella sp. DD12 (100%)
|
2 | 1079 bp | 65.43 | 3.71 | 93.14 | |
SCNpilot_expt_1000_bf_scaffold_30129
Species:
Shinella sp. DD12 (100%)
|
2 | 1486 bp | 62.52 | 3.70 | 93.27 | |
SCNpilot_expt_1000_bf_scaffold_28690
Species:
Shinella sp. DD12 (100%)
|
2 | 1547 bp | 64.51 | 4.36 | 93.28 | |
SCNpilot_expt_1000_bf_scaffold_10910
Species:
Shinella sp. DD12 (80%)
|
5 | 3733 bp | 66.11 | 7.37 | 93.30 | |
SCNpilot_expt_1000_bf_scaffold_79882
Species:
Shinella sp. DD12 (100%)
|
3 | 1016 bp | 60.63 | 3.69 | 93.31 | |
SCNpilot_expt_1000_bf_scaffold_4680
Species:
Shinella sp. DD12 (100%)
|
7 | 6450 bp | 65.88 | 7.17 | 93.40 | |
SCNpilot_expt_1000_bf_scaffold_10391
Species:
Shinella sp. DD12 (75%)
|
4 | 4493 bp | 69.95 | 6.29 | 93.41 | |
SCNpilot_expt_1000_bf_scaffold_36622
Species:
Shinella sp. DD12 (66.67%)
|
3 | 1827 bp | 61.19 | 5.47 | 93.43 | |
SCNpilot_expt_1000_bf_scaffold_38862
Species:
Shinella sp. DD12 (100%)
|
3 | 1200 bp | 64.17 | 4.58 | 93.50 | |
SCNpilot_expt_1000_bf_scaffold_2844
Species:
Shinella sp. DD12 (87.5%)
|
16 | 13567 bp | 67.89 | 7.13 | 93.56 | |
SCNpilot_expt_1000_bf_scaffold_30376
Species:
Shinella sp. DD12 (66.67%)
|
3 | 2035 bp | 61.82 | 3.81 | 93.61 | |
SCNpilot_expt_1000_bf_scaffold_51476
Species:
Shinella sp. DD12 (50%)
|
2 | 1489 bp | 63.67 | 3.02 | 93.69 | |
SCNpilot_expt_1000_bf_scaffold_30629
Species:
Shinella sp. DD12 (100%)
|
1 | 2046 bp | 63.49 | 5.99 | 93.70 | |
SCNpilot_expt_1000_bf_scaffold_54298
Species:
Shinella sp. DD12 (100%)
|
4 | 1210 bp | 60.66 | 4.96 | 93.72 | |
SCNpilot_expt_1000_bf_scaffold_18841
Species:
Shinella sp. DD12 (100%)
|
2 | 2204 bp | 62.98 | 2.95 | 93.78 | |
SCNpilot_expt_1000_bf_scaffold_22312
Species:
Shinella sp. DD12 (66.67%)
|
3 | 2431 bp | 68.00 | 5.66 | 93.79 | |
SCNpilot_expt_1000_bf_scaffold_46548
Species:
Shinella sp. DD12 (75%)
|
4 | 1749 bp | 63.92 | 3.00 | 94.00 | |
SCNpilot_expt_1000_bf_scaffold_4922
Order:
Rhizobiales (54.55%)
|
11 | 10822 bp | 57.10 | 4.97 | 94.00 | |
SCNpilot_expt_1000_bf_scaffold_5372
Species:
Shinella sp. DD12 (75%)
|
4 | 5853 bp | 67.67 | 5.94 | 94.00 | |
SCNpilot_expt_1000_bf_scaffold_47789
Species:
Shinella sp. DD12 (100%)
|
3 | 1741 bp | 66.80 | 8.62 | 94.08 | |
SCNpilot_expt_1000_bf_scaffold_13654
Species:
Shinella sp. DD12 (100%)
|
3 | 3855 bp | 67.26 | 6.23 | 94.16 | |
SCNpilot_expt_1000_bf_scaffold_14658
Species:
Shinella sp. DD12 (57.14%)
|
7 | 5208 bp | 68.09 | 4.46 | 94.24 | |
SCNpilot_expt_1000_bf_scaffold_36918
Species:
Shinella sp. DD12 (100%)
|
1 | 1256 bp | 64.97 | 8.36 | 94.35 | |
SCNpilot_expt_1000_bf_scaffold_4160
Species:
Shinella sp. DD12 (75%)
|
8 | 7442 bp | 67.24 | 6.82 | 94.37 | |
SCNpilot_expt_1000_bf_scaffold_3931
Species:
Shinella sp. DD12 (55%)
|
20 | 18741 bp | 68.09 | 5.34 | 94.40 | |
SCNpilot_expt_1000_bf_scaffold_6420
Phylum:
Proteobacteria (50%)
|
8 | 6451 bp | 63.82 | 5.46 | 94.40 | |
SCNpilot_expt_1000_bf_scaffold_4676
Species:
Shinella sp. DD12 (100%)
|
8 | 6453 bp | 65.60 | 5.97 | 94.42 | |
SCNpilot_expt_1000_bf_scaffold_7340
Species:
Shinella sp. DD12 (75%)
|
8 | 7468 bp | 67.38 | 7.26 | 94.44 | |
SCNpilot_expt_1000_bf_scaffold_27424
Species:
Shinella sp. DD12 (50%)
|
2 | 1607 bp | 69.32 | 2.80 | 94.46 | |
SCNpilot_expt_1000_bf_scaffold_66836
Species:
Shinella sp. DD12 (100%)
|
3 | 1130 bp | 63.27 | 3.10 | 94.51 | |
SCNpilot_expt_1000_bf_scaffold_6024
Species:
Shinella sp. DD12 (71.43%)
|
7 | 6759 bp | 66.49 | 7.06 | 94.54 | |
SCNpilot_expt_1000_bf_scaffold_2867
Species:
Nitratireductor indicus (58.33%)
|
12 | 11357 bp | 67.64 | 5.61 | 94.57 | |
SCNpilot_expt_1000_bf_scaffold_4659
Order:
Rhizobiales (81.82%)
|
22 | 23448 bp | 67.66 | 6.43 | 94.58 |