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SCNPILOT_EXPT_1000_BF_Shinella_65_6

SCNPILOT_EXPT_1000_BF_Shinella_sp__DD12_65_6
In projects: SCNPILOT_EXPT_1000_BF

Consensus taxonomy: Shinella sp. DD12  →  Shinella  →  Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from TS-ESOM, bin is a bit rough, added all Shinella scaffolds from ggkbase

Displaying items 701-750 of 914 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_1000_bf_scaffold_36954
Species: Shinella sp. DD12 (100%)
2 1255 bp 65.58 3.19 92.27
SCNpilot_expt_1000_bf_scaffold_4603
Species: Shinella sp. DD12 (93.75%)
16 14063 bp 65.94 5.49 92.31
SCNpilot_expt_1000_bf_scaffold_66437
Species: Shinella sp. DD12 (100%)
2 1129 bp 68.38 3.54 92.47
SCNpilot_expt_1000_bf_scaffold_63147
Species: Shinella sp. DD12 (75%)
4 1122 bp 60.16 3.57 92.51
SCNpilot_expt_1000_bf_scaffold_11045
Species: Shinella sp. DD12 (100%)
6 4074 bp 68.04 6.63 92.56
SCNpilot_expt_1000_bf_scaffold_39264
Species: Shinella sp. DD12 (100%)
1 1189 bp 65.35 5.05 92.60
SCNpilot_expt_1000_bf_scaffold_4928
Species: Shinella sp. DD12 (77.78%)
9 9006 bp 64.95 8.02 92.60
SCNpilot_expt_1000_bf_scaffold_3649
Species: Shinella sp. DD12 (93.33%)
30 29604 bp 66.19 7.24 92.63
SCNpilot_expt_1000_bf_scaffold_43487
Species: Shinella sp. DD12 (100%)
1 1064 bp 68.80 6.34 92.76
SCNpilot_expt_1000_bf_scaffold_66190
Species: Shinella sp. DD12 (50%)
2 1041 bp 66.76 7.20 92.80
SCNpilot_expt_1000_bf_scaffold_15364
Species: Shinella sp. DD12 (100%)
2 2614 bp 68.36 7.56 92.85
SCNpilot_expt_1000_bf_scaffold_27632
Species: Shinella sp. DD12 (100%)
2 1598 bp 66.90 3.29 92.93
SCNpilot_expt_1000_bf_scaffold_9351
Species: Shinella sp. DD12 (88.89%)
9 11976 bp 66.48 6.76 92.94
SCNpilot_expt_1000_bf_scaffold_27579
Species: Shinella sp. DD12 (100%)
2 1601 bp 62.96 3.75 92.94
SCNpilot_expt_1000_bf_scaffold_17097
Order: Rhizobiales (66.67%)
6 9557 bp 65.09 5.91 92.95
SCNpilot_expt_1000_bf_scaffold_7237
Class: Alphaproteobacteria (52.38%)
21 20412 bp 63.14 5.77 93.03
SCNpilot_expt_1000_bf_scaffold_3775
Species: Shinella sp. DD12 (90%)
10 10858 bp 68.71 6.01 93.06
SCNpilot_expt_1000_bf_scaffold_43007
Species: Shinella sp. DD12 (100%)
2 1079 bp 65.43 3.71 93.14
SCNpilot_expt_1000_bf_scaffold_30129
Species: Shinella sp. DD12 (100%)
2 1486 bp 62.52 3.70 93.27
SCNpilot_expt_1000_bf_scaffold_28690
Species: Shinella sp. DD12 (100%)
2 1547 bp 64.51 4.36 93.28
SCNpilot_expt_1000_bf_scaffold_10910
Species: Shinella sp. DD12 (80%)
5 3733 bp 66.11 7.37 93.30
SCNpilot_expt_1000_bf_scaffold_79882
Species: Shinella sp. DD12 (100%)
3 1016 bp 60.63 3.69 93.31
SCNpilot_expt_1000_bf_scaffold_4680
Species: Shinella sp. DD12 (100%)
7 6450 bp 65.88 7.17 93.40
SCNpilot_expt_1000_bf_scaffold_10391
Species: Shinella sp. DD12 (75%)
4 4493 bp 69.95 6.29 93.41
SCNpilot_expt_1000_bf_scaffold_36622
Species: Shinella sp. DD12 (66.67%)
3 1827 bp 61.19 5.47 93.43
SCNpilot_expt_1000_bf_scaffold_38862
Species: Shinella sp. DD12 (100%)
3 1200 bp 64.17 4.58 93.50
SCNpilot_expt_1000_bf_scaffold_2844
Species: Shinella sp. DD12 (87.5%)
16 13567 bp 67.89 7.13 93.56
SCNpilot_expt_1000_bf_scaffold_30376
Species: Shinella sp. DD12 (66.67%)
3 2035 bp 61.82 3.81 93.61
SCNpilot_expt_1000_bf_scaffold_51476
Species: Shinella sp. DD12 (50%)
2 1489 bp 63.67 3.02 93.69
SCNpilot_expt_1000_bf_scaffold_30629
Species: Shinella sp. DD12 (100%)
1 2046 bp 63.49 5.99 93.70
SCNpilot_expt_1000_bf_scaffold_54298
Species: Shinella sp. DD12 (100%)
4 1210 bp 60.66 4.96 93.72
SCNpilot_expt_1000_bf_scaffold_18841
Species: Shinella sp. DD12 (100%)
2 2204 bp 62.98 2.95 93.78
SCNpilot_expt_1000_bf_scaffold_22312
Species: Shinella sp. DD12 (66.67%)
3 2431 bp 68.00 5.66 93.79
SCNpilot_expt_1000_bf_scaffold_46548
Species: Shinella sp. DD12 (75%)
4 1749 bp 63.92 3.00 94.00
SCNpilot_expt_1000_bf_scaffold_4922
Order: Rhizobiales (54.55%)
11 10822 bp 57.10 4.97 94.00
SCNpilot_expt_1000_bf_scaffold_5372
Species: Shinella sp. DD12 (75%)
4 5853 bp 67.67 5.94 94.00
SCNpilot_expt_1000_bf_scaffold_47789
Species: Shinella sp. DD12 (100%)
3 1741 bp 66.80 8.62 94.08
SCNpilot_expt_1000_bf_scaffold_13654
Species: Shinella sp. DD12 (100%)
3 3855 bp 67.26 6.23 94.16
SCNpilot_expt_1000_bf_scaffold_14658
Species: Shinella sp. DD12 (57.14%)
7 5208 bp 68.09 4.46 94.24
SCNpilot_expt_1000_bf_scaffold_36918
Species: Shinella sp. DD12 (100%)
1 1256 bp 64.97 8.36 94.35
SCNpilot_expt_1000_bf_scaffold_4160
Species: Shinella sp. DD12 (75%)
8 7442 bp 67.24 6.82 94.37
SCNpilot_expt_1000_bf_scaffold_3931
Species: Shinella sp. DD12 (55%)
20 18741 bp 68.09 5.34 94.40
SCNpilot_expt_1000_bf_scaffold_6420
Phylum: Proteobacteria (50%)
8 6451 bp 63.82 5.46 94.40
SCNpilot_expt_1000_bf_scaffold_4676
Species: Shinella sp. DD12 (100%)
8 6453 bp 65.60 5.97 94.42
SCNpilot_expt_1000_bf_scaffold_7340
Species: Shinella sp. DD12 (75%)
8 7468 bp 67.38 7.26 94.44
SCNpilot_expt_1000_bf_scaffold_27424
Species: Shinella sp. DD12 (50%)
2 1607 bp 69.32 2.80 94.46
SCNpilot_expt_1000_bf_scaffold_66836
Species: Shinella sp. DD12 (100%)
3 1130 bp 63.27 3.10 94.51
SCNpilot_expt_1000_bf_scaffold_6024
Species: Shinella sp. DD12 (71.43%)
7 6759 bp 66.49 7.06 94.54
SCNpilot_expt_1000_bf_scaffold_2867
Species: Nitratireductor indicus (58.33%)
12 11357 bp 67.64 5.61 94.57
SCNpilot_expt_1000_bf_scaffold_4659
Order: Rhizobiales (81.82%)
22 23448 bp 67.66 6.43 94.58
Displaying items 701-750 of 914 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.