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SCNpilot_expt_300_bf_scaffold_1186

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_1186_1
Sphingomonas sp. RIT328, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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33..1229
DNA (1197bp) protein (399aa)
tuf; elongation factor Tu (EC:3.6.5.3)
elongation factor Tu n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037A29EC rbh
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1470591 species="Bacteria; Proteobacteria; Alphaproteobacte
SCNpilot_expt_300_bf_scaffold_1186_2

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1420..1728
DNA (309bp) protein (103aa)
30S ribosomal protein S10 n=3 Tax=root RepID=F3X0K1_9SPHN
rpsJ; 30S ribosomal protein S10
Ribosomal protein S10p/S20e {ECO:0000313|EMBL:AGU12267.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_300_bf_scaffold_1186_3
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2020..2769
DNA (750bp) protein (250aa)
50S ribosomal protein L3 n=1 Tax=Sphingomonas melonis RepID=UPI00037A6722 rbh
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
50S ribosomal protein L3
SCNpilot_expt_300_bf_scaffold_1186_4
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2773..3390
DNA (618bp) protein (206aa)
50S ribosomal protein L4 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B510EC rbh
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
50S ribosomal protein L4
SCNpilot_expt_300_bf_scaffold_1186_5

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3383..3703
DNA (321bp) protein (107aa)
50S ribosomal protein L23 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C902
50S ribosomal protein L23
Ribosomal protein L23 {ECO:0000313|EMBL:AGU12270.1}; TaxID=155900 species="unclassified sequences; environmental samples.;" source="uncultured organism.;"
SCNpilot_expt_300_bf_scaffold_1186_6
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3703..4536
DNA (834bp) protein (278aa)
50S ribosomal protein L2 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B40DC3 rbh
rplB; 50S ribosomal protein L2 rbh
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomo
SCNpilot_expt_300_bf_scaffold_1186_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4536..4814
DNA (279bp) protein (93aa)
30S ribosomal protein S19 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036A25EB
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
rpsS; 30S ribosomal protein S19
SCNpilot_expt_300_bf_scaffold_1186_8
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4814..5191
DNA (378bp) protein (126aa)
50S ribosomal protein L22 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0J5_9SPHN
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rplV; 50S ribosomal protein L22
SCNpilot_expt_300_bf_scaffold_1186_9
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(5188..5820)
DNA (633bp) protein (211aa)
Folylpolyglutamate Synthase n=1 Tax=Acetobacter pomorum DM001 RepID=F1YSU2_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KIJ72365.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_300_bf_scaffold_1186_10
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5879..6313
DNA (435bp) protein (145aa)
50S ribosomal protein L16 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B49B5D
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
50S ribosomal protein L16
SCNpilot_expt_300_bf_scaffold_1186_11
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6315..6518
DNA (204bp) protein (68aa)
50S ribosomal protein L29 n=1 Tax=Sphingomonas adhaesiva RepID=I0IW10_9SPHN
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
50S ribosomal protein L29
SCNpilot_expt_300_bf_scaffold_1186_12
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6534..6815
DNA (282bp) protein (94aa)
30S ribosomal protein S17 n=1 Tax=Sphingomonas aquatilis RepID=I0IW20_9SPHN
30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
SCNpilot_expt_300_bf_scaffold_1186_13
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6905..7273
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Sphingomonas melonis RepID=UPI00036CB992
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
50S ribosomal protein L14
SCNpilot_expt_300_bf_scaffold_1186_14
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7273..7590
DNA (318bp) protein (106aa)
50S ribosomal protein L24 n=1 Tax=Sphingomonas aquatilis RepID=I0IW21_9SPHN
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
50S ribosomal protein L24
SCNpilot_expt_300_bf_scaffold_1186_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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7583..8167
DNA (585bp) protein (195aa)
50S ribosomal protein L5 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030C8738
50S ribosomal protein L5
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333, ECO:0000313|EMBL:AJP72858.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphi
SCNpilot_expt_300_bf_scaffold_1186_16
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8208..8513
DNA (306bp) protein (102aa)
30S ribosomal protein S14 n=1 Tax=Sphingomonas adhaesiva RepID=I0IW13_9SPHN
30S ribosomal protein S14 {ECO:0000256|HAMAP-Rule:MF_00537}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
rpsN; 30S ribosomal protein S14
SCNpilot_expt_300_bf_scaffold_1186_17
Sphingomonas adhaesiva, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8526..8921
DNA (396bp) protein (132aa)
30S ribosomal protein S8 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00035C8151
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=28212 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomona
30S ribosomal protein S8
SCNpilot_expt_300_bf_scaffold_1186_18
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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8921..9412
DNA (492bp) protein (164aa)
50S ribosomal protein L6 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I5_9SPHN
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
50S ribosomal protein L6
SCNpilot_expt_300_bf_scaffold_1186_19
Sphingomonas adhaesiva, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9494..9754
DNA (261bp) protein (87aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas adhaesiva RepID=I0IW15_9SPHN
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=28212 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomon
rplR; 50S ribosomal protein L18
SCNpilot_expt_300_bf_scaffold_1186_20
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9758..10498
DNA (741bp) protein (247aa)
30S ribosomal protein S5 n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I3_9SPHN rbh
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sp
rpsE; 30S ribosomal protein S5
SCNpilot_expt_300_bf_scaffold_1186_21
Sphingomonas aquatilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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10504..10680
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Sphingomonas aquatilis RepID=I0IW25_9SPHN
50S ribosomal protein L30 {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00082687}; TaxID=93063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sph
50S ribosomal protein L30
SCNpilot_expt_300_bf_scaffold_1186_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10779..11309
DNA (531bp) protein (177aa)
50S ribosomal protein L15 n=1 Tax=Sphingomonas elodea RepID=UPI00026305BC rbh
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
rplO; 50S ribosomal protein L15
SCNpilot_expt_300_bf_scaffold_1186_23
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11453..11980
DNA (528bp) protein (176aa)
preprotein translocase subunit SecY n=1 Tax=Sphingomonas melonis RepID=UPI000381C760
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_300_bf_scaffold_1186_24].
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonada
preprotein translocase subunit SecY
SCNpilot_expt_300_bf_scaffold_1186_24
Sphingomonas sp. Ant20, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11986..12759
DNA (774bp) protein (258aa)
Protein translocase subunit SecY n=1 Tax=Sphingomonas sp. S17 RepID=F3X0I0_9SPHN
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=104605 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadac
preprotein translocase subunit SecY
SCNpilot_expt_300_bf_scaffold_1186_25
Sphingomonas sp. MM-1, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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12791..13438
DNA (648bp) protein (216aa)
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S0L5_9SPHN
SCNpilot_expt_300_bf_scaffold_1186_26
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14418..14786
DNA (369bp) protein (123aa)
30S ribosomal protein S13 n=1 Tax=Sphingomonas melonis RepID=UPI000368BBAB
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
30S ribosomal protein S13
SCNpilot_expt_300_bf_scaffold_1186_27
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14892..15281
DNA (390bp) protein (130aa)
30S ribosomal protein S11 n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037D5867
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingom
30S ribosomal protein S11
SCNpilot_expt_300_bf_scaffold_1186_28
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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15373..16434
DNA (1062bp) protein (354aa)
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha n=1 Tax=Sphingomonas melonis RepID=UPI0003812FDB rbh
SCNpilot_expt_300_bf_scaffold_1186_29
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


16645..17067
DNA (423bp) protein (141aa)
50S ribosomal protein L17 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FED7EC
50S ribosomal protein L17 {ECO:0000256|HAMAP-Rule:MF_01368, ECO:0000256|RuleBase:RU000661}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; S
50S ribosomal protein L17
SCNpilot_expt_300_bf_scaffold_1186_30
unknown

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17204..17818
DNA (615bp) protein (205aa)

This feature has no annotations

Displaying items 1-30 of 31 in total

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