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SCNpilot_expt_500_bf_scaffold_3910

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_3910_1
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..981
DNA (981bp) protein (327aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
tgt; queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase n=1 Tax=Sphingomonas sp. S17 RepID=F3X0M1_9SPHN
SCNpilot_expt_500_bf_scaffold_3910_2
unknown

Not on your lists

1011..1337
DNA (327bp) protein (109aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_3910_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1464..2471
DNA (1008bp) protein (336aa)
cell wall hydrolase n=1 Tax=Sphingomonas echinoides RepID=UPI00026C9BD3 rbh
Cell wall hydrolase {ECO:0000313|EMBL:AJP70660.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
cell wall hydrolase SleB
SCNpilot_expt_500_bf_scaffold_3910_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2564..2920)
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030B2315
Uncharacterized protein {ECO:0000313|EMBL:AJP70659.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3910_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3157..3438
DNA (282bp) protein (94aa)
hypothetical protein n=1 Tax=Sphingobium xenophagum RepID=UPI00036E0F16
Uncharacterized protein {ECO:0000313|EMBL:AJP70658.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3910_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3474..3809)
DNA (336bp) protein (112aa)
DNA repair protein RecN n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002F3D08F
DNA repair protein RecN {ECO:0000256|PIRNR:PIRNR003128}; Recombination protein N {ECO:0000256|PIRNR:PIRNR003128}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
DNA repair protein RecN
SCNpilot_expt_500_bf_scaffold_3910_7
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4140..5108
DNA (969bp) protein (323aa)
Negative regulator of class I heat shock protein n=1 Tax=mine drainage metagenome RepID=T1C9Q1_9ZZZZ
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
SCNpilot_expt_500_bf_scaffold_3910_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5130..5555)
DNA (426bp) protein (142aa)
transporter n=1 Tax=Sphingomonas elodea RepID=UPI000263218B
Outer membrane protein assembly factor BamD {ECO:0000256|HAMAP-Rule:MF_00922}; Flags: Precursor;; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
comL; putative lipoprotein; K05807 putative lipoprotein
SCNpilot_expt_500_bf_scaffold_3910_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6006..6830
DNA (825bp) protein (275aa)
phosphomannose isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000314D0F8 rbh
Phosphoheptose isomerase {ECO:0000313|EMBL:AJP70655.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
phosphomannose isomerase-like protein rbh
SCNpilot_expt_500_bf_scaffold_3910_10
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6926..7447
DNA (522bp) protein (174aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00035E946A
Sphingomonas taxi strain 30a NODE_30, whole genome shotgun sequence {ECO:0000313|EMBL:KIU28442.1}; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
17 kDa surface antigen
SCNpilot_expt_500_bf_scaffold_3910_11
Sphingopyxis alaskensis, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7520..7741)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GT79_SPHAL
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF53143.1}; Flags: Precursor;; TaxID=317655 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256); (Sphingomonas alaskensis).;"
SCNpilot_expt_500_bf_scaffold_3910_12
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7788..8381)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI0002630FA8
Uncharacterized protein {ECO:0000313|EMBL:AHE54595.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
SOUL heme-binding protein
SCNpilot_expt_500_bf_scaffold_3910_13
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8530..9264
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CC10A
Uncharacterized protein {ECO:0000313|EMBL:AJP74155.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3910_14
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9362..9718
DNA (357bp) protein (119aa)
hypothetical protein n=1 Tax=Sphingomonas melonis RepID=UPI0003693C88
Putative fluoride ion transporter CrcB {ECO:0000256|HAMAP-Rule:MF_00454}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
camphor resistance protein CrcB; K06199 CrcB protein
SCNpilot_expt_500_bf_scaffold_3910_15
Sphingomonas taxi, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9715..10974
DNA (1260bp) protein (420aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1549858 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas taxi.;"
pseudouridine synthase; K06179 23S rRNA pseudouridine955/2504/2580 synthase [EC:5.4.99.24] rbh
pseudouridine synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DA41F9 rbh
SCNpilot_expt_500_bf_scaffold_3910_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10974..11576
DNA (603bp) protein (201aa)
negative transcriptional regulator n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287F2D9
Negative transcriptional regulator {ECO:0000313|EMBL:AJP70651.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
negative transcriptional regulator; K07734 transcriptional regulator
SCNpilot_expt_500_bf_scaffold_3910_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11573..12232
DNA (660bp) protein (220aa)
HAD family hydrolase n=1 Tax=Sphingomonas elodea RepID=UPI0002632192 rbh
Haloacid dehalogenase {ECO:0000313|EMBL:AJP70650.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
HAD family hydrolase
SCNpilot_expt_500_bf_scaffold_3910_18
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12450..13085
DNA (636bp) protein (212aa)
ATPase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DA7238
ATPase {ECO:0000313|EMBL:AJP70648.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ATP12 ATPase
SCNpilot_expt_500_bf_scaffold_3910_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13177..13740)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. MM-1 RepID=M4S2S5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP70647.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3910_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13763..14413)
DNA (651bp) protein (217aa)
Guanylate kinase {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00021750}; EC=2.7.4.8 {ECO:0000256|HAMAP-Rule:MF_00328, ECO:0000256|SAAS:SAAS00036702};; GMP kinase {ECO:0000256|HAMAP-Rule:MF_00328}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
gmk; guanylate kinase; K00942 guanylate kinase [EC:2.7.4.8]
guanylate kinase n=1 Tax=Sphingomonas elodea RepID=UPI0002632195 rbh
SCNpilot_expt_500_bf_scaffold_3910_21
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14464..14658)
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00036494D9
Uncharacterized protein {ECO:0000313|EMBL:AJP70644.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_expt_500_bf_scaffold_3910_22
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14841..15827)
DNA (987bp) protein (329aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
class II fumarate hydratase (EC:4.2.1.2); K01679 fumarate hydratase, class II [EC:4.2.1.2]
fumarate hydratase n=1 Tax=Sphingomonas elodea RepID=UPI0002632197
SCNpilot_expt_500_bf_scaffold_3910_23
Blastomonas sp. CACIA14H2, Blastomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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16314..16970
DNA (657bp) protein (219aa)
Uncharacterized protein {ECO:0000313|EMBL:ESZ87293.1}; TaxID=1419876 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Blastomonas.;" source="Blastomonas sp. CACIA14H2.;"
SCNpilot_expt_500_bf_scaffold_3910_24
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17008..17496)
DNA (489bp) protein (163aa)
hypothetical protein n=1 Tax=Sphingomonas elodea RepID=UPI00026302F3
Uncharacterized protein {ECO:0000313|EMBL:AJP70639.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_3910_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17568..18155
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hisB; imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] rbh
imidazoleglycerol-phosphate dehydratase n=1 Tax=Sphingomonas RepID=UPI00026302F4 rbh
SCNpilot_expt_500_bf_scaffold_3910_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18166..18768
DNA (603bp) protein (201aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278, ECO:0000313|EMBL:AJP70636.1}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-]
imidazole glycerol phosphate synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DFCA11 rbh
SCNpilot_expt_500_bf_scaffold_3910_27
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18756..19505
DNA (750bp) protein (250aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031F4CC2 rbh
SCNpilot_expt_500_bf_scaffold_3910_28
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19615..20385
DNA (771bp) protein (257aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
imidazole glycerol phosphate synthase subunit hisF (EC:5.3.1.16); K02500 cyclase [EC:4.1.3.-]
imidazole glycerol phosphate synthase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031D3174 rbh
SCNpilot_expt_500_bf_scaffold_3910_29
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20509..20763
DNA (255bp) protein (85aa)
Sugar hydrolase {ECO:0000313|EMBL:GAO56453.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
SCNpilot_expt_500_bf_scaffold_3910_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20800..21003
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP70633.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying 30 items

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