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SCNPILOT_CONT_500_P_Rotifera_33_75

SCNPILOT_EXPT_500_P_unknown_33_106
In projects: SCNPILOT_EXPT_500_P

Consensus taxonomy:

Metagenomic Context

Parent: SCNpilot_expt_500_p_UNK

Properties

Avg. coverage: 106.02 Longest contig: 163.80 Kbp Bin length: 65.70 Mbp GC content: 33.14 %
Contigs count: 9246 Features count: 74211 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 42 / 55 MC: 35 BSCG 20 / 51 MC: 11 ASCG 30 / 38 MC: 20
Displaying items 1-50 of 9246 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_expt_500_p_scaffold_146 169 163795 bp 32.24 109.21 44.99
SCNpilot_expt_500_p_scaffold_148 166 142137 bp 32.02 111.55 47.12
SCNpilot_expt_500_p_scaffold_267 163 139173 bp 33.52 110.25 51.36
SCNpilot_expt_500_p_scaffold_311 144 117026 bp 32.62 108.90 39.96
SCNpilot_expt_500_p_scaffold_319 138 121263 bp 34.35 111.83 60.07
SCNpilot_expt_500_p_scaffold_141 132 112788 bp 32.76 112.49 48.77
SCNpilot_expt_500_p_scaffold_307 127 88681 bp 35.46 112.21 49.52
SCNpilot_expt_500_p_scaffold_367 125 90070 bp 32.35 111.28 57.65
SCNpilot_expt_500_p_scaffold_579 121 104421 bp 32.48 109.57 39.58
SCNpilot_expt_500_p_scaffold_257 120 91664 bp 34.39 111.36 54.37
SCNpilot_expt_500_p_scaffold_370 119 89756 bp 33.49 112.11 54.87
SCNpilot_expt_500_p_scaffold_463 118 91412 bp 34.99 113.40 63.14
SCNpilot_expt_500_p_scaffold_230 109 82072 bp 34.03 111.03 58.98
SCNpilot_expt_500_p_scaffold_214 108 106804 bp 33.35 108.92 56.62
SCNpilot_expt_500_p_scaffold_430 104 84804 bp 33.80 113.59 63.59
SCNpilot_expt_500_p_scaffold_287 101 80675 bp 34.06 113.19 48.66
SCNpilot_expt_500_p_scaffold_984 96 85950 bp 33.86 112.93 61.90
SCNpilot_expt_500_p_scaffold_2178 96 82052 bp 34.29 112.43 48.25
SCNpilot_expt_500_p_scaffold_475
Domain: Metazoa (59.57%)
94 71439 bp 34.37 110.89 64.60
SCNpilot_expt_500_p_scaffold_265 93 77424 bp 33.79 113.34 50.80
SCNpilot_expt_500_p_scaffold_221 86 83222 bp 32.84 109.39 57.32
SCNpilot_expt_500_p_scaffold_373 86 64164 bp 32.62 110.91 54.13
SCNpilot_expt_500_p_scaffold_693 84 73877 bp 32.86 111.94 58.30
SCNpilot_expt_500_p_scaffold_330 84 60722 bp 33.69 113.05 56.21
SCNpilot_expt_500_p_scaffold_656 84 64814 bp 32.19 110.89 48.36
SCNpilot_expt_500_p_scaffold_329 83 62087 bp 34.18 113.23 51.56
SCNpilot_expt_500_p_scaffold_509 82 63719 bp 33.82 110.34 53.36
SCNpilot_expt_500_p_scaffold_464 81 63047 bp 32.56 111.80 51.25
SCNpilot_expt_500_p_scaffold_782 81 55965 bp 34.29 114.05 52.99
SCNpilot_expt_500_p_scaffold_318 81 69443 bp 33.06 110.23 44.27
SCNpilot_expt_500_p_scaffold_684 80 82332 bp 35.16 109.18 50.36
SCNpilot_expt_500_p_scaffold_338 80 58320 bp 33.24 111.84 53.62
SCNpilot_expt_500_p_scaffold_817 79 60438 bp 35.99 113.03 56.90
SCNpilot_expt_500_p_scaffold_386 79 64214 bp 32.84 110.55 50.97
SCNpilot_expt_500_p_scaffold_825 78 59787 bp 33.75 108.33 51.00
SCNpilot_expt_500_p_scaffold_798 75 51560 bp 34.99 108.51 61.70
SCNpilot_expt_500_p_scaffold_603 75 62032 bp 34.25 109.09 46.74
SCNpilot_expt_500_p_scaffold_327 74 59971 bp 33.49 114.42 45.33
SCNpilot_expt_500_p_scaffold_921 71 68921 bp 32.95 110.87 58.58
SCNpilot_expt_500_p_scaffold_431 71 63301 bp 34.09 111.09 63.02
SCNpilot_expt_500_p_scaffold_248 71 77351 bp 31.75 100.12 72.04
SCNpilot_expt_500_p_scaffold_361 70 55277 bp 34.18 109.97 57.65
SCNpilot_expt_500_p_scaffold_948 69 55212 bp 32.82 110.09 47.34
SCNpilot_expt_500_p_scaffold_991 68 51474 bp 32.77 107.26 50.22
SCNpilot_expt_500_p_scaffold_776 68 53813 bp 35.47 111.00 47.91
SCNpilot_expt_500_p_scaffold_564 68 63267 bp 33.19 112.01 50.81
SCNpilot_expt_500_p_scaffold_827 68 50893 bp 33.29 112.47 51.84
SCNpilot_expt_500_p_scaffold_490 67 51465 bp 32.51 109.69 55.58
SCNpilot_expt_500_p_scaffold_347 67 57392 bp 33.28 112.32 67.37
SCNpilot_expt_500_p_scaffold_641 67 52487 bp 32.14 111.05 53.95
Displaying items 1-50 of 9246 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.