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SCNPILOT_EXPT_750_BF_Sphingobacteriia_40_10

SCNPILOT_EXPT_750_BF_Sphingobacteriales_40_10
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 10.05 Longest contig: 339.57 Kbp Bin length: 6.22 Mbp GC content: 40.06 %
Contigs count: 114 Features count: 5311 rRNAs count: 0 tRNAs count: 53

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Displaying items 1-50 of 114 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_694
Phylum: Bacteroidetes (57.69%)
26 25710 bp 37.54 12.57 83.06
scnpilot_expt_750_bf_scaffold_2146
Species: Niastella koreensis (50%)
6 8279 bp 40.48 11.99 80.05
scnpilot_expt_750_bf_scaffold_1357
Phylum: Bacteroidetes (81.82%)
11 10341 bp 38.01 11.80 69.28
scnpilot_expt_750_bf_scaffold_9458
Order: Bacteroidales (50%)
4 3017 bp 38.55 11.77 89.89
scnpilot_expt_750_bf_scaffold_863
Domain: Bacteria (58.82%)
17 17628 bp 38.13 11.64 79.03
scnpilot_expt_750_bf_scaffold_869
Domain: Bacteria (86.67%)
15 17386 bp 39.64 11.45 88.62
scnpilot_expt_750_bf_scaffold_25255
Genus: Chryseobacterium (66.67%)
3 2058 bp 43.93 11.42 98.83
scnpilot_expt_750_bf_scaffold_374
Order: Sphingobacteriales (56.36%)
110 145101 bp 40.85 11.41 89.97
scnpilot_expt_750_bf_scaffold_586
Order: Sphingobacteriales (55.26%)
76 70509 bp 40.77 11.35 89.01
scnpilot_expt_750_bf_scaffold_654
Phylum: Bacteroidetes (69.57%)
23 29048 bp 41.49 11.12 91.00
scnpilot_expt_750_bf_scaffold_415
Phylum: Bacteroidetes (73.68%)
133 132109 bp 41.43 11.11 85.30
scnpilot_expt_750_bf_scaffold_183
Order: Sphingobacteriales (61.15%)
139 175426 bp 40.18 11.03 91.12
scnpilot_expt_750_bf_scaffold_52
Order: Sphingobacteriales (67.76%)
214 286213 bp 40.40 11.00 89.17
scnpilot_expt_750_bf_scaffold_19821
Phylum: Bacteroidetes (66.67%)
3 1509 bp 41.48 10.93 70.38
scnpilot_expt_750_bf_scaffold_639
Order: Sphingobacteriales (56.25%)
32 29943 bp 38.37 10.91 83.33
scnpilot_expt_750_bf_scaffold_192
Phylum: Bacteroidetes (64.57%)
127 159378 bp 38.93 10.79 88.05
scnpilot_expt_750_bf_scaffold_858
Order: Sphingobacteriales (62.75%)
51 60316 bp 40.91 10.77 90.11
scnpilot_expt_750_bf_scaffold_764
Order: Cytophagales (50%)
30 32585 bp 38.96 10.76 89.56
scnpilot_expt_750_bf_scaffold_360
Order: Sphingobacteriales (68.48%)
257 311943 bp 40.20 10.73 88.60
scnpilot_expt_750_bf_scaffold_328
Order: Sphingobacteriales (54.55%)
121 153910 bp 39.67 10.72 89.49
scnpilot_expt_750_bf_scaffold_754
Order: Sphingobacteriales (52.63%)
19 21989 bp 41.51 10.62 91.90
scnpilot_expt_750_bf_scaffold_309
Phylum: Bacteroidetes (83.33%)
102 110797 bp 40.36 10.62 89.12
scnpilot_expt_750_bf_scaffold_913
Phylum: Bacteroidetes (81.82%)
11 16075 bp 39.58 10.62 86.67
scnpilot_expt_750_bf_scaffold_306
Order: Sphingobacteriales (67.95%)
78 85989 bp 40.22 10.60 87.81
scnpilot_expt_750_bf_scaffold_1389
Order: Flavobacteriales (60.53%)
38 36861 bp 40.53 10.56 89.07
scnpilot_expt_750_bf_scaffold_4053
Order: Sphingobacteriales (57.89%)
19 9193 bp 42.73 10.52 88.05
scnpilot_expt_750_bf_scaffold_778
Species: Niastella koreensis (66.67%)
6 21032 bp 42.98 10.51 97.48
scnpilot_expt_750_bf_scaffold_617
Order: Sphingobacteriales (68.97%)
58 61337 bp 40.20 10.47 87.17
scnpilot_expt_750_bf_scaffold_566
Order: Sphingobacteriales (70.37%)
27 36538 bp 41.11 10.46 82.97
scnpilot_expt_750_bf_scaffold_658
Order: Sphingobacteriales (57.69%)
26 28887 bp 40.44 10.45 90.03
scnpilot_expt_750_bf_scaffold_9928
Order: Sphingobacteriales (60%)
5 3739 bp 40.01 10.43 90.59
scnpilot_expt_750_bf_scaffold_316
Order: Sphingobacteriales (58.82%)
85 105923 bp 39.86 10.39 88.26
scnpilot_expt_750_bf_scaffold_641
Order: Sphingobacteriales (59.26%)
27 29904 bp 40.37 10.35 85.91
scnpilot_expt_750_bf_scaffold_18139
Species: Pedobacter antarcticus (50%)
2 1599 bp 40.09 10.32 47.84
scnpilot_expt_750_bf_scaffold_2114
Order: Sphingobacteriales (50%)
6 7059 bp 38.42 10.31 78.20
scnpilot_expt_750_bf_scaffold_1523
Order: Sphingobacteriales (66.67%)
3 9177 bp 40.57 10.30 99.41
scnpilot_expt_750_bf_scaffold_7474
Phylum: Bacteroidetes (75%)
4 2960 bp 37.20 10.30 88.28
scnpilot_expt_750_bf_scaffold_179
Order: Sphingobacteriales (61.83%)
131 142472 bp 39.89 10.30 88.94
scnpilot_expt_750_bf_scaffold_677
Order: Sphingobacteriales (59.09%)
22 32836 bp 39.62 10.29 93.34
scnpilot_expt_750_bf_scaffold_202
Order: Sphingobacteriales (60.24%)
254 339573 bp 40.16 10.28 89.65
scnpilot_expt_750_bf_scaffold_534
Order: Sphingobacteriales (50%)
72 79824 bp 39.13 10.27 87.85
scnpilot_expt_750_bf_scaffold_812
Order: Sphingobacteriales (72.73%)
22 26173 bp 42.42 10.24 84.71
scnpilot_expt_750_bf_scaffold_65
Order: Sphingobacteriales (65.92%)
223 265134 bp 39.86 10.22 89.89
scnpilot_expt_750_bf_scaffold_423
Order: Sphingobacteriales (73.81%)
42 54471 bp 41.03 10.19 91.60
scnpilot_expt_750_bf_scaffold_478
Order: Sphingobacteriales (65.22%)
46 46716 bp 39.56 10.14 85.97
scnpilot_expt_750_bf_scaffold_706
Order: Sphingobacteriales (59.62%)
52 57880 bp 41.50 10.09 89.64
scnpilot_expt_750_bf_scaffold_2830
Order: Sphingobacteriales (57.14%)
7 7352 bp 38.57 10.03 71.97
scnpilot_expt_750_bf_scaffold_467
Order: Sphingobacteriales (61.34%)
119 132754 bp 39.62 10.03 87.51
scnpilot_expt_750_bf_scaffold_293
Phylum: Bacteroidetes (75.16%)
157 172272 bp 40.29 10.01 86.26
scnpilot_expt_750_bf_scaffold_8372
Order: Sphingobacteriales (50%)
4 2726 bp 39.47 10.00 72.19
Displaying items 1-50 of 114 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.