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SCNPILOT_EXPT_750_BF_Rhizobiales_63_6_partial

SCNPILOT_EXPT_750_BF_Rhizobiales_63_6
In projects: SCNPILOT_EXPT_750_BF

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNpilot_expt_750_bf_UNK

Properties

Avg. coverage: 6.39 Longest contig: 101.11 Kbp Bin length: 5.31 Mbp GC content: 63.21 %
Contigs count: 470 Features count: 5644 rRNAs count: 0 tRNAs count: 44

Genome completeness

megabin RP 44 / 55 MC: 15 BSCG 44 / 51 MC: 12 ASCG 9 / 38 MC: 2

Description

from ESOM, highly fragmented

Displaying items 151-200 of 470 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_expt_750_bf_scaffold_6607
Domain: Bacteria (77.78%)
9 7397 bp 65.28 5.88 90.12
scnpilot_expt_750_bf_scaffold_5972
Class: Alphaproteobacteria (50%)
6 6989 bp 65.15 5.22 90.10
scnpilot_expt_750_bf_scaffold_7197
Class: Alphaproteobacteria (60%)
10 8089 bp 67.18 6.71 90.09
scnpilot_expt_750_bf_scaffold_1246
Genus: Afipia (73.68%)
38 35302 bp 63.37 6.82 89.97
scnpilot_expt_750_bf_scaffold_4706
Class: Alphaproteobacteria (75%)
4 5120 bp 64.73 6.30 89.94
scnpilot_expt_750_bf_scaffold_3057
Genus: Afipia (58.33%)
12 12255 bp 61.77 4.88 89.91
scnpilot_expt_750_bf_scaffold_1123
Species: Afipia broomeae (57.14%)
21 21324 bp 63.52 7.22 89.91
scnpilot_expt_750_bf_scaffold_902
Genus: Afipia (73.33%)
15 16389 bp 61.71 6.32 89.90
scnpilot_expt_750_bf_scaffold_1938
Species: Afipia broomeae (90%)
10 11722 bp 61.57 6.70 89.88
scnpilot_expt_750_bf_scaffold_2143
Genus: Afipia (69.23%)
13 13777 bp 63.16 6.12 89.82
scnpilot_expt_750_bf_scaffold_1718
Order: Rhizobiales (71.43%)
7 8318 bp 65.88 6.04 89.81
scnpilot_expt_750_bf_scaffold_13735
Order: Rhizobiales (85.71%)
7 6374 bp 63.30 6.94 89.80
scnpilot_expt_750_bf_scaffold_5374
Class: Alphaproteobacteria (77.78%)
9 9266 bp 61.95 5.64 89.78
scnpilot_expt_750_bf_scaffold_3306
Class: Alphaproteobacteria (71.43%)
7 6457 bp 62.72 4.65 89.76
scnpilot_expt_750_bf_scaffold_1240
Genus: Afipia (56.25%)
16 15264 bp 62.05 6.60 89.76
scnpilot_expt_750_bf_scaffold_2190
Class: Alphaproteobacteria (57.14%)
14 16438 bp 68.05 6.01 89.74
scnpilot_expt_750_bf_scaffold_2351
Class: Alphaproteobacteria (62.5%)
8 6556 bp 64.92 4.96 89.73
scnpilot_expt_750_bf_scaffold_1088
Genus: Afipia (66.67%)
27 20634 bp 62.87 5.95 89.73
scnpilot_expt_750_bf_scaffold_2165
Genus: Afipia (73.33%)
15 10774 bp 63.17 6.45 89.72
scnpilot_expt_750_bf_scaffold_1087
Species: Afipia broomeae (50%)
52 59215 bp 63.16 7.13 89.59
scnpilot_expt_750_bf_scaffold_2568
Order: Rhizobiales (53.33%)
15 11517 bp 63.58 5.86 89.58
scnpilot_expt_750_bf_scaffold_1334
Genus: Afipia (72.73%)
11 10477 bp 62.76 7.04 89.51
scnpilot_expt_750_bf_scaffold_3896
Species: Afipia broomeae (85.71%)
7 6151 bp 63.45 7.80 89.50
scnpilot_expt_750_bf_scaffold_1987
Genus: Hyphomicrobium (60%)
5 7452 bp 61.77 5.74 89.49
scnpilot_expt_750_bf_scaffold_2241
Order: Rhizobiales (66.67%)
12 11656 bp 63.98 6.24 89.49
scnpilot_expt_750_bf_scaffold_1925
Domain: Bacteria (64.71%)
17 14855 bp 64.69 6.11 89.46
scnpilot_expt_750_bf_scaffold_6173
Order: Rhizobiales (71.43%)
7 5905 bp 65.49 5.88 89.42
scnpilot_expt_750_bf_scaffold_4101
Order: Burkholderiales (62.5%)
8 7781 bp 60.80 5.04 89.41
scnpilot_expt_750_bf_scaffold_2090
Genus: Methylobacterium (62.5%)
8 7128 bp 64.34 5.75 89.35
scnpilot_expt_750_bf_scaffold_797
Species: Afipia broomeae (60.61%)
33 30076 bp 62.36 5.89 89.30
scnpilot_expt_750_bf_scaffold_2936
Species: Hyphomicrobium nitrativorans (57.14%)
7 6502 bp 64.47 6.15 89.28
scnpilot_expt_750_bf_scaffold_1840
Order: Rhizobiales (69.23%)
13 9738 bp 65.96 5.65 89.28
scnpilot_expt_750_bf_scaffold_970
Species: Afipia broomeae (70.59%)
17 17358 bp 62.90 6.51 89.15
scnpilot_expt_750_bf_scaffold_1026
Species: Afipia broomeae (52.38%)
21 19013 bp 62.67 7.01 89.14
scnpilot_expt_750_bf_scaffold_3130
Phylum: Proteobacteria (66.67%)
9 7776 bp 63.86 5.14 89.12
scnpilot_expt_750_bf_scaffold_3138
Order: Rhizobiales (50%)
12 9256 bp 66.15 5.89 89.10
scnpilot_expt_750_bf_scaffold_3017 6 5460 bp 67.36 6.23 89.07
scnpilot_expt_750_bf_scaffold_2718
Species: Afipia broomeae (55.56%)
9 7509 bp 65.91 7.52 89.05
scnpilot_expt_750_bf_scaffold_5412
Genus: Afipia (66.67%)
9 8611 bp 63.83 7.00 89.05
scnpilot_expt_750_bf_scaffold_3938
Genus: Afipia (84.21%)
19 17290 bp 62.86 6.36 89.01
scnpilot_expt_750_bf_scaffold_788
Genus: Afipia (66.67%)
21 20487 bp 63.87 7.27 89.00
scnpilot_expt_750_bf_scaffold_991
Species: Afipia broomeae (67.86%)
28 27520 bp 62.50 7.19 89.00
scnpilot_expt_750_bf_scaffold_1269
Class: Alphaproteobacteria (53.85%)
13 11026 bp 66.04 6.85 88.94
scnpilot_expt_750_bf_scaffold_2820
Species: Bradyrhizobiaceae bacterium SG-6C (57.14%)
7 7043 bp 61.45 6.60 88.94
scnpilot_expt_750_bf_scaffold_4742
Species: Afipia broomeae (66.67%)
6 6147 bp 61.67 6.63 88.92
scnpilot_expt_750_bf_scaffold_3437
Class: Alphaproteobacteria (62.5%)
8 5000 bp 65.20 5.35 88.92
scnpilot_expt_750_bf_scaffold_3618
Genus: Afipia (56.25%)
16 13362 bp 62.51 6.31 88.91
scnpilot_expt_750_bf_scaffold_2107
Species: Afipia broomeae (55%)
20 22391 bp 62.34 7.51 88.90
scnpilot_expt_750_bf_scaffold_4588
Class: Alphaproteobacteria (57.14%)
7 5963 bp 57.49 4.53 88.85
scnpilot_expt_750_bf_scaffold_2878 16 13663 bp 65.36 5.78 88.84
Displaying items 151-200 of 470 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.