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scnpilot_solids2_trim150_scaffold_65

Search features with annotation key words

Displaying items 1-30 of 139 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_solids2_trim150_scaffold_65_1
unknown

Not on your lists

973..1230
DNA (258bp) protein (86aa)

This feature has no annotations

scnpilot_solids2_trim150_scaffold_65_2
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1648..3201
DNA (1554bp) protein (518aa)
Phospholipase D/Transphosphatidylase n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QPY2_NITHX rbh
phospholipase D/transphosphatidylase rbh
Phospholipase D/Transphosphatidylase {ECO:0000313|EMBL:ABE61715.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_solids2_trim150_scaffold_65_3
Nitratireductor basaltis, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3357..3860)
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:KFB09422.1}; TaxID=472175 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor basaltis.;"
hypothetical protein
scnpilot_solids2_trim150_scaffold_65_trna_2
unknown

Not on your lists

comp(3956..4029)
DNA (74bp)
transferRNA Met
scnpilot_solids2_trim150_scaffold_65_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4128..4490)
DNA (363bp) protein (121aa)
signal peptide protein n=1 Tax=Afipia birgiae RepID=UPI0002F60131
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI07456.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
scnpilot_solids2_trim150_scaffold_65_5
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4544..5182)
DNA (639bp) protein (213aa)
Phosphatidylethanolamine N-methyltransferase {ECO:0000313|EMBL:EFI52296.1}; EC=2.1.1.17 {ECO:0000313|EMBL:EFI52296.1};; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
pmtA2; phosphatidylethanolamine N-methyltransferase PmtA (EC:2.1.1.17) rbh
Phosphatidylethanolamine N-methyltransferase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W6_9BRAD rbh
scnpilot_solids2_trim150_scaffold_65_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5198..6379)
DNA (1182bp) protein (394aa)
tRNA-specific 2-thiouridylase MnmA {ECO:0000256|HAMAP-Rule:MF_00144}; EC=2.8.1.- {ECO:0000256|HAMAP-Rule:MF_00144};; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
mnmA; tRNA-specific 2-thiouridylase MnmA (EC:2.1.1.61); K00566 tRNA-specific 2-thiouridylase [EC:2.8.1.-] rbh
tRNA-specific 2-thiouridylase MnmA n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W5_9BRAD rbh
scnpilot_solids2_trim150_scaffold_65_7
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6948..8240
DNA (1293bp) protein (431aa)
Flagellar hook-length control protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W4_9BRAD rbh
Flagellar hook-length control protein {ECO:0000313|EMBL:EFI52294.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
putative flagellar hook-length control rbh
scnpilot_solids2_trim150_scaffold_65_8
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8250..8984
DNA (735bp) protein (245aa)
Flagellar hook capping protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W3_9BRAD rbh
Basal-body rod modification protein FlgD {ECO:0000313|EMBL:CEG07228.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein; K02389 flagellar basal-body rod modification protein FlgD rbh
scnpilot_solids2_trim150_scaffold_65_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9157..9432
DNA (276bp) protein (92aa)
Uncharacterized protein n=25 Tax=Bradyrhizobiaceae RepID=A4Z085_BRASO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE41068.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
scnpilot_solids2_trim150_scaffold_65_10
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9649..11205
DNA (1557bp) protein (519aa)
Flagellar M-ring protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W1_9BRAD rbh
Flagellar M-ring protein {ECO:0000256|PIRNR:PIRNR004862}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
fliF; flagellar M-ring protein FliF; K02409 flagellar M-ring protein FliF rbh
scnpilot_solids2_trim150_scaffold_65_11
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11209..12300
DNA (1092bp) protein (364aa)
Flagellar motor switch protein FliG n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2W0_9BRAD rbh
Flagellar motor switch protein FliG {ECO:0000256|PIRNR:PIRNR003161}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
fliG; flagellar motor switch protein FliG; K02410 flagellar motor switch protein FliG rbh
scnpilot_solids2_trim150_scaffold_65_12
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12300..12944
DNA (645bp) protein (215aa)
Flagellar assembly protein H n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V9_9BRAD rbh
Flagellar assembly protein H {ECO:0000313|EMBL:CEG07232.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein; K02411 flagellar assembly protein FliH rbh
scnpilot_solids2_trim150_scaffold_65_13
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12937..13296
DNA (360bp) protein (120aa)
Flagellar motor switch protein FliN n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V8_9BRAD
Flagellar motor switch protein FliN {ECO:0000313|EMBL:CEG07233.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
fliN; flagellar motor switch protein FliN; K02417 flagellar motor switch protein FliN/FliY
scnpilot_solids2_trim150_scaffold_65_14
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13355..14731
DNA (1377bp) protein (459aa)
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V7_9BRAD rbh
Nitrogen regulation protein NR(I) {ECO:0000313|EMBL:CEG07234.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
Fis family two component transcriptional regulator sigma-54 specific rbh
scnpilot_solids2_trim150_scaffold_65_15
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14954..17110
DNA (2157bp) protein (719aa)
para-aminobenzoate synthase (EC:2.6.1.85); K13950 para-aminobenzoate synthetase [EC:2.6.1.85] rbh
Para-aminobenzoate synthase, subunit I n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V6_9BRAD rbh
Para-aminobenzoate synthase, subunit I {ECO:0000313|EMBL:EFI52286.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_65_16
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17107..17907
DNA (801bp) protein (267aa)
branched-chain-amino-acid aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NQB5_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31311.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_65_17
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17928..18329
DNA (402bp) protein (134aa)
4-carboxymuconolactone decarboxylase (EC:4.1.1.44); K01607 4-carboxymuconolactone decarboxylase [EC:4.1.1.44]
4-carboxymuconolactone decarboxylase n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V4_9BRAD
4-carboxymuconolactone decarboxylase {ECO:0000313|EMBL:CEG07237.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_65_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18388..18603)
DNA (216bp) protein (72aa)
UPF0337 protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NLW9_AFIFE
UPF0337 protein {ECO:0000313|EMBL:EKS31312.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
CsbD-like protein
scnpilot_solids2_trim150_scaffold_65_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18974..21238
DNA (2265bp) protein (755aa)
fadE; acyl-coenzyme A dehydrogenase FadE (EC:1.3.99.-); K06445 acyl-CoA dehydrogenase [EC:1.3.99.-] rbh
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2V2_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52282.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
scnpilot_solids2_trim150_scaffold_65_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21238..22521
DNA (1284bp) protein (428aa)
fadA2; acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] rbh
Acetyl-CoA C-acetyltransferase n=1 Tax=Afipia felis ATCC 53690 RepID=K8NS94_AFIFE rbh
Acetyl-CoA C-acetyltransferase {ECO:0000313|EMBL:EKS31314.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_65_21
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22531..24612
DNA (2082bp) protein (694aa)
fadJ; fatty acid oxidation complex subunit alpha (EC:4.2.1.17 5.1.2.3 1.1.1.35); K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3] rbh
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NV61_AFIFE rbh
Uncharacterized protein {ECO:0000313|EMBL:EKS31315.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
scnpilot_solids2_trim150_scaffold_65_22
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24634..25071
DNA (438bp) protein (146aa)
acyl-CoA thioester hydrolase YciA (EC:3.1.2.-); K10806 acyl-CoA thioesterase YciA [EC:3.1.2.-]
Thioesterase superfamily protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U9_9BRAD
Putative acyl-CoA thioester hydrolase {ECO:0000313|EMBL:CEG07242.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_65_23
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25105..25617)
DNA (513bp) protein (171aa)
Lytic transglycosylase catalytic n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U8_9BRAD rbh
Internal virion protein D {ECO:0000313|EMBL:CEG07243.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
putative transglycosylase
scnpilot_solids2_trim150_scaffold_65_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25812..27362)
DNA (1551bp) protein (517aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U7_9BRAD rbh
Uncharacterized protein {ECO:0000313|EMBL:EFI52277.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
hypothetical protein rbh
scnpilot_solids2_trim150_scaffold_65_25
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27486..28688
DNA (1203bp) protein (401aa)
Extensin family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U6_9BRAD rbh
Extensin family protein {ECO:0000313|EMBL:EFI52276.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
extensin family protein rbh
scnpilot_solids2_trim150_scaffold_65_26
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28695..28862)
DNA (168bp) protein (56aa)
Uncharacterized protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CEG07246.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
scnpilot_solids2_trim150_scaffold_65_27
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29005..29628)
DNA (624bp) protein (208aa)
Transcriptional regulator, TetR family n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U4_9BRAD rbh
Potential acrAB operon repressor {ECO:0000313|EMBL:CEG07247.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
transcriptional regulator, TetR family rbh
scnpilot_solids2_trim150_scaffold_65_28
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29765..31003
DNA (1239bp) protein (413aa)
Secretion protein HlyD family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U3_9BRAD rbh
Multidrug resistance protein MdtN {ECO:0000313|EMBL:CEG07248.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
secretion protein HlyD family protein; K03543 multidrug resistance protein A rbh
scnpilot_solids2_trim150_scaffold_65_29
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31022..32608
DNA (1587bp) protein (529aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Afipia sp. 1NLS2 RepID=D6V2U2_9BRAD rbh
Multidrug resistance protein B {ECO:0000313|EMBL:CEG07249.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
emrB; multidrug resistance protein B rbh
Displaying items 1-30 of 139 in total

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