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solids_Rhizobiales_2

SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_1
In projects: scnpilot_solids_dereplicated  |  SCNPILOT_SOLID2_TRIM150

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID2_TRIM150_UNK Manually curated genome

Properties

Avg. coverage: 1.00 Longest contig: 56.04 Kbp Bin length: 2.69 Mbp GC content: 66.69 %
Contigs count: 167 Features count: 2701 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 19 / 55 MC: 1 BSCG 19 / 51 ASCG 9 / 38 MC: 1
Displaying items 51-100 of 167 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids2_trim150_scaffold_3660_curated
Order: Rhizobiales (71.43%)
7 6471 bp 66.02 1.00 87.95
scnpilot_solids2_trim150_scaffold_768_curated
Order: Rhizobiales (81.82%)
22 25945 bp 67.45 1.00 92.14
scnpilot_solids2_trim150_scaffold_2825_curated
Class: Alphaproteobacteria (63.64%)
11 8454 bp 68.77 1.00 94.22
scnpilot_solids2_trim150_scaffold_351_curated
Class: Alphaproteobacteria (61.54%)
52 48171 bp 65.99 1.00 91.22
scnpilot_solids2_trim150_scaffold_3990_curated
Order: Rhizobiales (50%)
4 5838 bp 68.02 1.00 78.26
scnpilot_solids2_trim150_scaffold_848_curated
Order: Rhizobiales (81.82%)
22 24498 bp 67.30 1.00 92.02
scnpilot_solids2_trim150_scaffold_1108_curated
Order: Rhizobiales (100%)
21 19478 bp 68.76 1.00 91.24
scnpilot_solids2_trim150_scaffold_1778_curated
Class: Alphaproteobacteria (65.38%)
26 30207 bp 65.24 1.00 91.32
scnpilot_solids2_trim150_scaffold_3304_curated
Order: Rhizobiales (75%)
8 7248 bp 67.80 1.00 91.35
scnpilot_solids2_trim150_scaffold_4328_curated
Order: Rhizobiales (100%)
8 5284 bp 66.69 1.00 84.20
scnpilot_solids2_trim150_scaffold_1882_curated
Order: Rhizobiales (80%)
15 12429 bp 64.85 1.00 91.87
scnpilot_solids2_trim150_scaffold_2550_curated
Order: Rhizobiales (75.86%)
29 28254 bp 66.51 1.00 83.38
scnpilot_solids2_trim150_scaffold_3268_curated
Order: Rhizobiales (66.67%)
6 7355 bp 67.38 1.00 90.43
scnpilot_solids2_trim150_scaffold_3788_curated
Order: Rhizobiales (75%)
8 6154 bp 66.85 1.00 90.97
scnpilot_solids2_trim150_scaffold_3013_curated
Order: Rhizobiales (71.43%)
7 7910 bp 66.09 1.00 96.33
scnpilot_solids2_trim150_scaffold_2304_curated
Order: Rhizobiales (50%)
10 10358 bp 68.51 1.00 88.69
scnpilot_solids2_trim150_scaffold_2710_curated
Order: Rhizobiales (88.89%)
9 8861 bp 66.52 1.00 93.31
scnpilot_solids2_trim150_scaffold_454_curated
Order: Rhizobiales (94.12%)
34 39893 bp 65.83 1.00 93.14
scnpilot_solids2_trim150_scaffold_455_curated
Order: Rhizobiales (76.47%)
34 39830 bp 67.82 1.00 91.75
scnpilot_solids2_trim150_scaffold_759_curated
Order: Rhizobiales (64.29%)
28 26520 bp 66.57 1.00 88.44
scnpilot_solids2_trim150_scaffold_3491_curated
Species: Bosea sp. LC85 (66.67%)
9 6774 bp 67.71 1.00 99.51
scnpilot_solids2_trim150_scaffold_1342_curated
Order: Rhizobiales (68.75%)
16 16702 bp 66.94 1.00 86.52
scnpilot_solids2_trim150_scaffold_850_curated
Order: Rhizobiales (88%)
25 24452 bp 65.55 1.00 89.26
scnpilot_solids2_trim150_scaffold_3090_curated
Order: Rhizobiales (57.14%)
7 7765 bp 66.54 1.00 87.12
scnpilot_solids2_trim150_scaffold_751_curated
Class: Alphaproteobacteria (65.52%)
29 29449 bp 66.87 1.00 92.14
scnpilot_solids2_trim150_scaffold_501_curated
Order: Rhizobiales (55.56%)
36 40608 bp 66.75 1.00 95.34
scnpilot_solids2_trim150_scaffold_616_curated
Order: Rhizobiales (62.5%)
32 30772 bp 66.76 1.00 89.57
scnpilot_solids2_trim150_scaffold_1050_curated
Order: Rhizobiales (75%)
20 20521 bp 67.19 1.00 89.70
scnpilot_solids2_trim150_scaffold_2330_curated
Order: Rhizobiales (70%)
10 10261 bp 67.97 1.00 90.11
scnpilot_solids2_trim150_scaffold_3314_curated
Order: Rhizobiales (55.56%)
9 7238 bp 65.35 1.00 82.56
scnpilot_solids2_trim150_scaffold_2840_curated
Order: Rhizobiales (75%)
12 8438 bp 63.33 1.00 86.15
scnpilot_solids2_trim150_scaffold_1293_curated
Order: Rhizobiales (89.47%)
19 17041 bp 66.16 1.00 88.09
scnpilot_solids2_trim150_scaffold_1502_curated
Order: Rhizobiales (84.21%)
19 15268 bp 67.10 1.00 88.05
scnpilot_solids2_trim150_scaffold_3009_curated
Order: Rhizobiales (85.71%)
7 7949 bp 66.44 1.00 90.05
scnpilot_solids2_trim150_scaffold_1410_curated
Order: Rhizobiales (64.71%)
17 21270 bp 67.39 1.00 94.50
scnpilot_solids2_trim150_scaffold_4180_curated
Order: Rhizobiales (85.71%)
7 5499 bp 66.78 1.00 82.49
scnpilot_solids2_trim150_scaffold_855_curated
Order: Rhizobiales (90%)
20 24363 bp 66.75 1.00 92.67
scnpilot_solids2_trim150_scaffold_1190_curated
Order: Rhizobiales (70%)
20 18484 bp 64.03 1.00 88.10
scnpilot_solids2_trim150_scaffold_2283_curated
Order: Rhizobiales (91.67%)
12 10547 bp 68.89 1.00 94.49
scnpilot_solids2_trim150_scaffold_1351_curated
Order: Rhizobiales (63.16%)
19 16683 bp 65.28 1.00 88.06
scnpilot_solids2_trim150_scaffold_3521_curated
Order: Rhizobiales (54.55%)
11 11852 bp 65.94 1.00 88.34
scnpilot_solids2_trim150_scaffold_2432_curated
Order: Rhizobiales (70%)
10 9860 bp 66.92 1.00 91.03
scnpilot_solids2_trim150_scaffold_530_curated
Order: Rhizobiales (77.42%)
31 35120 bp 65.26 1.00 87.32
scnpilot_solids2_trim150_scaffold_331_curated
Order: Rhizobiales (54.72%)
53 56037 bp 65.92 1.00 94.35
scnpilot_solids2_trim150_scaffold_1697_curated
Order: Rhizobiales (60.87%)
23 22742 bp 68.76 1.00 94.20
scnpilot_solids2_trim150_scaffold_332_curated
Order: Rhizobiales (53.33%)
45 50070 bp 65.26 1.00 90.21
scnpilot_solids2_trim150_scaffold_1605_curated
Order: Rhizobiales (60%)
15 14415 bp 65.01 1.00 85.89
scnpilot_solids2_trim150_scaffold_1901_curated
Order: Rhizobiales (75%)
12 12352 bp 66.93 1.00 90.52
scnpilot_solids2_trim150_scaffold_3243_curated
Order: Rhizobiales (85.71%)
14 14771 bp 66.20 1.00 84.19
scnpilot_solids2_trim150_scaffold_2850_curated
Genus: Bradyrhizobium (87.5%)
8 8382 bp 66.48 1.00 94.56
Displaying items 51-100 of 167 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.