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SCNpilot_solid_1_scaffold_111

Search features with annotation key words

Displaying items 1-30 of 95 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_111_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..403
DNA (402bp) protein (134aa)
Translation initiation factor IF-3 n=2 Tax=Alicycliphilus denitrificans RepID=F4G433_ALIDK
translation initiation factor if-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadacea
SCNpilot_solid_1_scaffold_111_2
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


584..787
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=2 Tax=Acidovorax RepID=RL35_ACIET
rpmI; 50S ribosomal protein l35
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (
SCNpilot_solid_1_scaffold_111_3
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


814..1173
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=6 Tax=Comamonadaceae RepID=RL20_ACISJ
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovor
SCNpilot_solid_1_scaffold_111_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1276..2349
DNA (1074bp) protein (358aa)
phenylalanyl-tRNA synthetase subunit alpha (EC:6.1.1.20)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}; EC=6.1.1.20 {ECO:0000255|HAMAP-Rule:MF_00281};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000255|HAMAP-Rule:MF_00281}
phenylalanyl-tRNA synthetase n=1 Tax=Variovorax paradoxus RepID=UPI000361D620 rbh
SCNpilot_solid_1_scaffold_111_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


2469..4898
DNA (2430bp) protein (810aa)
Phenylalanine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00103829}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00283, ECO:0000256|SAAS:SAAS00022425};; Phenylalanyl-tR
phenylalanyl-tRNA synthetase subunit beta n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035EB222 rbh
phenylalanyl-tRNA synthetase subunit beta
SCNpilot_solid_1_scaffold_111_6
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4895..5233
DNA (339bp) protein (113aa)
Integration host factor subunit alpha n=2 Tax=Alicycliphilus denitrificans RepID=E8TR05_ALIDB
ihfA; integration host factor alpha-subunit; K04764 integration host factor subunit alpha Tax=GWA2_Curvibacter_64_110_curated
integration host factor subunit alpha
SCNpilot_solid_1_scaffold_111_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5319..5699
DNA (381bp) protein (127aa)
Transcriptional regulator, MerR family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHY5_ACIET
MerR family transcriptional regulator
Transcriptional regulator, MerR family {ECO:0000313|EMBL:ACM32917.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovo
SCNpilot_solid_1_scaffold_111_trna_1
unknown

Not on your lists

5724..5797
DNA (74bp)
transferRNA
SCNpilot_solid_1_scaffold_111_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5970..8684
DNA (2715bp) protein (905aa)
magnesium-transporting ATPase n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002377B60
Magnesium-transporting ATPase MgtA {ECO:0000313|EMBL:GAO23397.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicyc
magnesium ABC transporter ATPase
SCNpilot_solid_1_scaffold_111_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8769..9308
DNA (540bp) protein (180aa)
Polyhydroxyalkanoate synthesis repressor PhaR n=2 Tax=Alicycliphilus denitrificans RepID=E8TRI0_ALIDB
polyhydroxyalkanoate synthesis repressor phar
Polyhydroxyalkonate synthesis repressor PhaR {ECO:0000313|EMBL:GAO27217.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" sour
SCNpilot_solid_1_scaffold_111_10
Rhodanobacter sp. 115, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9415..11559
DNA (2145bp) protein (715aa)
Generic methyltransferase n=1 Tax=Rhodanobacter sp. 115 RepID=I4WJF8_9GAMM
Generic methyltransferase {ECO:0000313|EMBL:EIL99599.1}; TaxID=1162282 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter
hypothetical protein
SCNpilot_solid_1_scaffold_111_11

Not on your lists

11661..12740
DNA (1080bp) protein (360aa)
ADP-ribosylation/crystallin J1 {ECO:0000313|EMBL:EQD65891.1}; EC=3.2.2.19 {ECO:0000313|EMBL:EQD65891.1};; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="m
ADP-ribosylation/crystallin J1 n=1 Tax=mine drainage metagenome RepID=T1AZ80_9ZZZZ rbh
ADP-ribosylation/crystallin J1
SCNpilot_solid_1_scaffold_111_12
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12758..13444
DNA (687bp) protein (229aa)
Oxidoreductase FAD/NAD(P)-binding domain protein n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0AI51_NITEC
oxidoreductase FAD/NAD(P)-binding subunit
Oxidoreductase FAD/NAD(P)-binding domain protein {ECO:0000313|EMBL:ABI58981.1}; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;"
SCNpilot_solid_1_scaffold_111_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13446..13979)
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V9G5_VARPE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU39649.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (
SCNpilot_solid_1_scaffold_111_14
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13982..14875)
DNA (894bp) protein (298aa)
Candidate membrane protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5D5_RAMTT rbh
membrane protein
Candidate membrane protein {ECO:0000313|EMBL:AEG91445.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataou
SCNpilot_solid_1_scaffold_111_15
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14910..15515)
DNA (606bp) protein (202aa)
Candidate recombinase A n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y5D6_RAMTT
hypothetical protein; K03744 LemA protein Tax=CG_Rhodof_03
recA; recombinase A
SCNpilot_solid_1_scaffold_111_16
Pseudomonas sp. EGD-AK9, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15542..16045)
DNA (504bp) protein (168aa)
Ecotin n=1 Tax=Pseudomonas sp. EGD-AK9 RepID=U2B032_9PSED
Ecotin {ECO:0000313|EMBL:ERI50362.1}; TaxID=1386078 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. EGD-AK9.;"
eco; Ecotin
SCNpilot_solid_1_scaffold_111_17
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16061..16555)
DNA (495bp) protein (165aa)
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF (EC:4.6.1.12) Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036D7BDF
2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase
SCNpilot_solid_1_scaffold_111_18
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16661..17356)
DNA (696bp) protein (232aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase id=1266330 bin=GWE1_Burkholderiales_65_30 species=Hydrogenophaga sp. PBC genus=Hydrogenophaga taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Tax=BJP_08E140C01_Burkholderiales_65_30
SCNpilot_solid_1_scaffold_111_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17349..19676)
DNA (2328bp) protein (776aa)
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CYP7_VARPS rbh
Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding {ECO:0000313|EMBL:ACS19006.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Va
molybdopterin binding aldehyde oxidase and xanthine dehydrogenase
SCNpilot_solid_1_scaffold_111_20
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19940..23530
DNA (3591bp) protein (1197aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=296591 species="Bacteria; Pr
transcription-repair coupling factor n=1 Tax=Curvibacter lanceolatus RepID=UPI0003733133 rbh
transcription-repair coupling factor
SCNpilot_solid_1_scaffold_111_21
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23575..24351)
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6B1Z1_DELSC rbh
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:AEF90711.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain
SCNpilot_solid_1_scaffold_111_22
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24376..25209)
DNA (834bp) protein (278aa)
Amidohydrolase 2 n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6B1Z2_DELSC rbh
amidohydrolase 2 rbh
Amidohydrolase 2 {ECO:0000313|EMBL:AEF90712.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
SCNpilot_solid_1_scaffold_111_23
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25211..25330)
DNA (120bp) protein (40aa)
NAD(P)H dehydrogenase (Quinone) {ECO:0000313|EMBL:AEF90713.1}; EC=1.6.5.2 {ECO:0000313|EMBL:AEF90713.1};; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonad
SCNpilot_solid_1_scaffold_111_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25590..26576
DNA (987bp) protein (329aa)
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain n=1 Tax=Variovorax sp. CF313 RepID=J2JI40_9BURK rbh
Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain {ECO:0000313|EMBL:EJL67560.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkh
AraC family transcriptional regulator rbh
SCNpilot_solid_1_scaffold_111_25
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26644..27105)
DNA (462bp) protein (154aa)
Putative anti-sigma factor n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0MG59_BORPB
btrW; anti-sigma factor
Putative anti-sigma factor {ECO:0000313|EMBL:CCJ62266.1}; TaxID=568706 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussi
SCNpilot_solid_1_scaffold_111_26
Achromobacter arsenitoxydans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27136..27471)
DNA (336bp) protein (112aa)
Anti-sigma factor antagonist n=1 Tax=Achromobacter arsenitoxydans SY8 RepID=H0F7T4_9BURK
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=477184 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacte
anti-sigma factor antagonist
SCNpilot_solid_1_scaffold_111_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27696..29636
DNA (1941bp) protein (647aa)
Serine phosphatase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07JP5_RHOP5 rbh
serine phosphatase
Serine phosphatase {ECO:0000313|EMBL:ABJ07839.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rh
SCNpilot_solid_1_scaffold_111_28
Streptomyces rubellomurinus, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29750..30919
DNA (1170bp) protein (390aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036AE157 rbh
Acyl-protein synthase {ECO:0000313|EMBL:KJS53020.1}; TaxID=1615590 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces rubellomurinus subsp. in
Long-chain-fatty-acid-luciferin-component ligase
SCNpilot_solid_1_scaffold_111_29
Streptomyces cattleya, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31002..33521
DNA (2520bp) protein (840aa)
hypothetical protein n=1 Tax=Thiomicrospira halophila RepID=UPI00036E9151 rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW98566.1}; TaxID=1003195 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces cattleya (strain ATCC
Displaying items 1-30 of 95 in total

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