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SCNpilot_solid_1_scaffold_3

Search features with annotation key words

Displaying items 361-390 of 445 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_3_358
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(380637..381437)
DNA (801bp) protein (267aa)
alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Pseudomonas thermotolerans RepID=UPI00037B4473
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase rbh
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase {ECO:0000313|EMBL:CDM25710.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" s
SCNpilot_solid_1_scaffold_3_359
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(381449..383896)
DNA (2448bp) protein (816aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002DCC473 rbh
Lipid carrier : UDP-N-acetylgalactosaminyltransferase / Alpha-1,3-N-acetylgalactosamine transferase PglA rbh
Lipid carrier : UDP-N-acetylgalactosaminyltransferase / Alpha-1,3-N-acetylgalactosamine transferase PglA {ECO:0000313|EMBL:CDM25721.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacte
SCNpilot_solid_1_scaffold_3_360
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(383893..384984)
DNA (1092bp) protein (364aa)
Putative glycosyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQX4_PUSST rbh
Glycosyl transferase, group 1 family protein rbh
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:CDM25722.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_3_361
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(384985..386112)
DNA (1128bp) protein (376aa)
Putative glycosyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQX6_PUSST rbh
Glycosyl transferase, group 1 family protein rbh
Glycosyl transferase, group 1 family protein {ECO:0000313|EMBL:CDM25723.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" sour
SCNpilot_solid_1_scaffold_3_362
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(386109..387473)
DNA (1365bp) protein (455aa)
UDP-glucose 4-epimerase (EC:5.1.3.2) rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDM25724.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CDM25724.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae;
virulence factor MVIN family protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031D67E2 rbh
SCNpilot_solid_1_scaffold_3_363
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(387470..388495)
DNA (1026bp) protein (342aa)
UDP-glucose 4-epimerase (EC:5.1.3.2) rbh
UDP-glucose 4-epimerase {ECO:0000313|EMBL:CDM25725.1}; EC=5.1.3.2 {ECO:0000313|EMBL:CDM25725.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae;
Capsular polysaccharide biosynthesis protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQX8_PUSST rbh
SCNpilot_solid_1_scaffold_3_364
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(388511..389785)
DNA (1275bp) protein (425aa)
UDP-glucose dehydrogenase (EC:1.1.1.22) rbh
UDP-glucose dehydrogenase {ECO:0000313|EMBL:CDM25726.1}; EC=1.1.1.22 {ECO:0000313|EMBL:CDM25726.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenacea
Polysaccharide biosynthesis protein n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KYH0_BORA1 rbh
SCNpilot_solid_1_scaffold_3_365
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(389828..390970)
DNA (1143bp) protein (381aa)
Glycosyltransferase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQY0_PUSST rbh
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase rbh
Undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase {ECO:0000313|EMBL:CDM25727.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae;
SCNpilot_solid_1_scaffold_3_366
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(391096..392550)
DNA (1455bp) protein (485aa)
Succinate-semialdehyde dehydrogenase [NADP+] (EC:1.2.1.79) rbh
Succinate-semialdehyde dehydrogenase [NADP+] {ECO:0000313|EMBL:CDM25729.1}; EC=1.2.1.79 {ECO:0000313|EMBL:CDM25729.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderi
Succinate-semialdehyde dehydrogenase n=1 Tax=Herbaspirillum sp. CF444 RepID=J2LYE2_9BURK rbh
SCNpilot_solid_1_scaffold_3_367
Oligella urethralis, Oligella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

392734..394002
DNA (1269bp) protein (423aa)
hypothetical protein n=1 Tax=Oligella ureolytica RepID=UPI0003820FDE rbh
Sodium:glutamate symporter {ECO:0000313|EMBL:KGF30543.1}; TaxID=1401065 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Oligella.;" source="Oligella urethralis
sodium/glutamate symporter
SCNpilot_solid_1_scaffold_3_368
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(394338..395015)
DNA (678bp) protein (226aa)
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS00010155}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658, ECO:0000256|SAAS:SAAS000101
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQY1_PUSST rbh
hypothetical protein rbh
SCNpilot_solid_1_scaffold_3_369
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395025..395678)
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F13E07
hypothetical cytochrome oxidase associated membrane protein rbh
Hypothetical cytochrome oxidase associated membrane protein {ECO:0000313|EMBL:CDM25733.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castell
SCNpilot_solid_1_scaffold_3_370
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(395675..396325)
DNA (651bp) protein (217aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00037F9B15
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone {ECO:0000313|EMBL:CDM25734.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderial
SCNpilot_solid_1_scaffold_3_371
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396341..396925)
DNA (585bp) protein (195aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002F8A5CC rbh
probable cytochrome c subunit of cbb3 type cytochrome oxidase rbh
Probable cytochrome c subunit of cbb3 type cytochrome oxidase {ECO:0000313|EMBL:CDM25735.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Caste
SCNpilot_solid_1_scaffold_3_372
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(396922..397557)
DNA (636bp) protein (212aa)
Cytochrome c oxidase subunit CcoO (EC:1.9.3.1) rbh
Cytochrome c oxidase subunit CcoO {ECO:0000313|EMBL:CDM25736.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDM25736.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcali
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E77452 rbh
SCNpilot_solid_1_scaffold_3_373
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(397560..399197)
DNA (1638bp) protein (546aa)
Cytochrome c oxidase subunit CcoN (EC:1.9.3.1) rbh
Cytochrome c oxidase subunit CcoN {ECO:0000313|EMBL:CDM25737.1}; EC=1.9.3.1 {ECO:0000313|EMBL:CDM25737.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcali
membrane protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031670C5 rbh
SCNpilot_solid_1_scaffold_3_374
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

399511..399933
DNA (423bp) protein (141aa)
Uncharacterized protein n=2 Tax=Alcaligenes RepID=M5IV00_9BURK
OsmC/Ohr family protein
OsmC/Ohr family protein {ECO:0000313|EMBL:CDM25738.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_3_375
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(400012..401004)
DNA (993bp) protein (331aa)
Thymidylate synthase (EC:2.1.1.45) rbh
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:000
Thymidylate synthase n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QF39_BORBO rbh
SCNpilot_solid_1_scaffold_3_376
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(401001..401840)
DNA (840bp) protein (280aa)
Citrate lyase beta chain (EC:4.1.3.6) rbh
Citrate lyase beta chain {ECO:0000313|EMBL:CDM25740.1}; EC=4.1.3.6 {ECO:0000313|EMBL:CDM25740.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae;
Putative citrate lyase beta subunit n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTY8_PUSST
SCNpilot_solid_1_scaffold_3_377
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(401869..403392)
DNA (1524bp) protein (508aa)
Fumarate hydratase {ECO:0000313|EMBL:KCB40760.1}; EC=4.2.1.2 {ECO:0000313|EMBL:KCB40760.1};; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Borde
Putative fumarate hydratase n=3 Tax=Bordetella bronchiseptica RepID=K0MWL7_BORBM rbh
fumarate hydratase
SCNpilot_solid_1_scaffold_3_378
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(403392..404159)
DNA (768bp) protein (256aa)
Enoyl-CoA hydratase (EC:4.2.1.17) rbh
Enoyl-CoA hydratase {ECO:0000313|EMBL:CDM25741.1}; EC=4.2.1.17 {ECO:0000313|EMBL:CDM25741.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Cas
Enoyl-CoA hydratase n=1 Tax=Alcaligenes sp. EGD-AK7 RepID=U7U882_9BURK rbh
SCNpilot_solid_1_scaffold_3_379
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

404256..405161
DNA (906bp) protein (302aa)
Glycyl-tRNA synthetase alpha chain (EC:6.1.1.14) rbh
Glycine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104892}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00254, ECO:0000256|SAAS:SAAS00104898};; Glycyl-tRNA syntheta
Glycine--tRNA ligase alpha subunit n=1 Tax=Alcaligenes faecalis subsp. faecalis NCIB 8687 RepID=J0JC99_ALCFA rbh
SCNpilot_solid_1_scaffold_3_380
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

405158..407290
DNA (2133bp) protein (711aa)
Glycyl-tRNA synthetase beta chain (EC:6.1.1.14) rbh
Glycine--tRNA ligase beta subunit {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039777}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00255, ECO:0000256|SAAS:SAAS00039811};; Glycyl-tRNA synthetas
Glycine--tRNA ligase beta subunit n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I5K4_BORPD rbh
SCNpilot_solid_1_scaffold_3_381
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

407287..407841
DNA (555bp) protein (185aa)
Histidinol-phosphatase (EC:3.1.3.15) rbh
D,D-heptose 1,7-bisphosphate phosphatase {ECO:0000256|PIRNR:PIRNR004682}; EC=3.1.3.- {ECO:0000256|PIRNR:PIRNR004682};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderia
D,D-heptose 1,7-bisphosphate phosphatase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9I5K1_BORPD
SCNpilot_solid_1_scaffold_3_382
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

407838..408566
DNA (729bp) protein (243aa)
1-acyl-sn-glycerol-3-phosphate acyltransferase (EC:2.3.1.51) rbh
1-acyl-sn-glycerol-3-phosphate acyltransferase {ECO:0000313|EMBL:CDM25745.1}; EC=2.3.1.51 {ECO:0000313|EMBL:CDM25745.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholde
Probable acyltransferase n=2 Tax=Bordetella parapertussis RepID=K0MF95_BORPB rbh
SCNpilot_solid_1_scaffold_3_383
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

408553..409404
DNA (852bp) protein (284aa)
Uncharacterized protein n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HHI5_ACHXA
Zinc metalloprotease rbh
Zinc metalloprotease {ECO:0000313|EMBL:CDM25746.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defra
SCNpilot_solid_1_scaffold_3_384
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

409478..409873
DNA (396bp) protein (132aa)
Lactoylglutathione lyase (EC:4.4.1.5)
Lactoylglutathione lyase {ECO:0000256|RuleBase:RU361179, ECO:0000313|EMBL:CDM25747.1}; EC=4.4.1.5 {ECO:0000256|RuleBase:RU361179, ECO:0000313|EMBL:CDM25747.1};; Glyoxalase I {ECO:0000256|RuleBase:RU36
Lactoylglutathione lyase n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTX7_PUSST
SCNpilot_solid_1_scaffold_3_385
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(409881..410711)
DNA (831bp) protein (277aa)
SSU rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase (EC:2.1.1.182) rbh
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015019}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607, ECO:0000256|SAAS:SAAS00015085};; 16S rR
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QQZ2_BORBO
SCNpilot_solid_1_scaffold_3_386
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(410708..412225)
DNA (1518bp) protein (506aa)
Peptidyl-prolyl-cis-trans isomerase SurA (EC:5.2.1.8) rbh
Chaperone SurA n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTX3_PUSST rbh
Chaperone SurA {ECO:0000256|HAMAP-Rule:MF_01183, ECO:0000256|SAAS:SAAS00043023}; Peptidyl-prolyl cis-trans isomerase SurA {ECO:0000256|HAMAP-Rule:MF_01183}; Rotamase SurA {ECO:0000256|HAMAP-Rule:MF_01
SCNpilot_solid_1_scaffold_3_387
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(412225..414585)
DNA (2361bp) protein (787aa)
LPS-assembly protein LptD n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GTX2_PUSST rbh
Outer membrane protein Imp rbh
LPS-assembly protein LptD {ECO:0000256|HAMAP-Rule:MF_01411, ECO:0000256|SAAS:SAAS00019908}; Flags: Precursor;; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alc
Displaying items 361-390 of 445 in total

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