ggKbase home page

SCNpilot_solid_1_scaffold_3

Search features with annotation key words

Displaying items 331-360 of 445 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_solid_1_scaffold_3_329
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

353727..354368
DNA (642bp) protein (214aa)
Membrane protein YicG n=1 Tax=Advenella kashmirensis (strain DSM 17095 / LMG 22695 / WT001) RepID=I3UGJ0_ADVKW rbh
putative membrane protein rbh
Putative membrane protein {ECO:0000313|EMBL:CDM25685.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella
SCNpilot_solid_1_scaffold_3_330
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(354388..354996)
DNA (609bp) protein (203aa)
tRNA--hydroxylase n=1 Tax=Pseudomonas sp. HYS RepID=UPI00029B53E3
tRNA-(ms[2]io[6]A)-hydroxylase rbh
tRNA-(Ms[2]io[6]A)-hydroxylase {ECO:0000313|EMBL:CDM25687.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellani
SCNpilot_solid_1_scaffold_3_331
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(355048..356292)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030065F7 rbh
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDX37890.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhi
putative cyanate transport protein CynX
SCNpilot_solid_1_scaffold_3_332
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(356296..356760)
DNA (465bp) protein (155aa)
CMP/dCMP deaminase (EC:3.5.4.3)
CMP/dCMP deaminase {ECO:0000313|EMBL:ABF10594.1}; EC=3.5.4.3 {ECO:0000313|EMBL:ABF10594.1};; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupr
CMP/dCMP deaminase n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EPJ7_9BURK
SCNpilot_solid_1_scaffold_3_333
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(356792..357514)
DNA (723bp) protein (241aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FD2969
Uncharacterized protein {ECO:0000313|EMBL:CDX62655.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium pluri
ankyrin repeat-containing protein
SCNpilot_solid_1_scaffold_3_334
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(357915..360116)
DNA (2202bp) protein (734aa)
Uncharacterized protein n=2 Tax=Alcaligenes faecalis RepID=J0JDZ8_ALCFA rbh
Uncharacterized protein {ECO:0000313|EMBL:EJC61949.1}; TaxID=1156918 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes faecalis
hypothetical protein
SCNpilot_solid_1_scaffold_3_335
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(360113..360433)
DNA (321bp) protein (107aa)
Nucleotide pyrophosphohydrolase n=1 Tax=Marinobacter sp. ES-1 RepID=U7FNR7_9ALTE
MazG nucleotide pyrophosphohydrolase domain protein {ECO:0000313|EMBL:KCB36555.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" s
MazG nucleotide pyrophosphohydrolase
SCNpilot_solid_1_scaffold_3_336
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(360533..361624)
DNA (1092bp) protein (364aa)
Ribosome-binding ATPase YchF n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQV8_PUSST rbh
GTP-binding and nucleic acid-binding protein YchF rbh
Ribosome-binding ATPase YchF {ECO:0000256|HAMAP-Rule:MF_00944}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castella
SCNpilot_solid_1_scaffold_3_337
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(361761..362297)
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI00035E6E84
Isochorismatase {ECO:0000313|EMBL:KFI31561.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missourien
yrdC; isochorismatase family protein
SCNpilot_solid_1_scaffold_3_338
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(362319..363113)
DNA (795bp) protein (265aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0002E5F1D2
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM25699.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_3_339
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(363191..363787)
DNA (597bp) protein (199aa)
Peptidyl-tRNA hydrolase (EC:3.1.1.29) rbh
Peptidyl-tRNA hydrolase {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBase:RU000673}; Short=PTH {ECO:0000256|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000256|HAMAP-Rule:MF_00083, ECO:0000256|RuleBa
Peptidyl-tRNA hydrolase n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=PTH_BORPD rbh
SCNpilot_solid_1_scaffold_3_340
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(363901..364518)
DNA (618bp) protein (206aa)
50S ribosomal protein L25 n=1 Tax=Achromobacter xylosoxidans C54 RepID=E5U5J2_ALCXX
LSU ribosomal protein L25p rbh
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00147491}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023359}; TaxID=1437824 s
SCNpilot_solid_1_scaffold_3_341
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(364618..365550)
DNA (933bp) protein (311aa)
Ribose-phosphate pyrophosphokinase (EC:2.7.6.1) rbh
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CDM25702.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583, ECO:00003
Ribose-phosphate pyrophosphokinase n=1 Tax=Bordetella pertussis (strain ATCC 9797 / DSM 5571 / NCTC 10739 / 18323) RepID=J7RI99_BORP1 rbh
SCNpilot_solid_1_scaffold_3_trna_3
unknown

Not on your lists

comp(365667..365740)
DNA (74bp)
transferRNA
SCNpilot_solid_1_scaffold_3_342
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(365746..366642)
DNA (897bp) protein (299aa)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148) rbh
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:M
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00030C01F2 rbh
SCNpilot_solid_1_scaffold_3_343
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(366677..367249)
DNA (573bp) protein (191aa)
Outer membrane lipoprotein LolB n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQW4_PUSST
Outer membrane lipoprotein LolB
Outer-membrane lipoprotein LolB {ECO:0000256|SAAS:SAAS00002103}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castell
SCNpilot_solid_1_scaffold_3_344
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(367246..369021)
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00036C709E rbh
hypothetical protein rbh
Uncharacterized protein {ECO:0000313|EMBL:CDM25705.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_3_345
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

369158..369934
DNA (777bp) protein (259aa)
Formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase {ECO:0000256|SAAS:SAAS00020852, ECO:0000313|EMBL:CDM25706.1}; EC=3.2.2.- {ECO:0000256|SAAS:SAAS00275239};; EC=3.2.2.23 {ECO:0000256|SAAS:SAAS00020832, ECO:0000313|E
Formamidopyrimidine-DNA glycosylase n=2 Tax=Bordetella holmesii RepID=M5NT43_9BORD rbh
SCNpilot_solid_1_scaffold_3_346
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(369939..370283)
DNA (345bp) protein (115aa)
endoribonuclease n=1 Tax=Oceanicola sp. S124 RepID=UPI0002557D70
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDM25707.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella de
SCNpilot_solid_1_scaffold_3_347
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(370381..371793)
DNA (1413bp) protein (471aa)
D-2-hydroxyglutarate dehydrogenase (EC:1.1.99.2) rbh
D-2-hydroxyglutarate dehydrogenase {ECO:0000313|EMBL:CDM25708.1}; EC=1.1.99.2 {ECO:0000313|EMBL:CDM25708.1};; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alca
Oxidoreductase n=1 Tax=Rhodanobacter sp. 115 RepID=I4VUR3_9GAMM rbh
SCNpilot_solid_1_scaffold_3_348
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

371934..373319
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GQX2_PUSST rbh
phosphoglucomutase rbh
Phosphoglucomutase {ECO:0000313|EMBL:CDM25709.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragr
SCNpilot_solid_1_scaffold_3_349
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(373330..373662)
DNA (333bp) protein (111aa)
Uncharacterized protein n=2 Tax=Bordetella bronchiseptica RepID=K0MV58_BORBM
hypothetical protein
Stress responsive A/B barrel domain protein {ECO:0000313|EMBL:KDD49210.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="B
SCNpilot_solid_1_scaffold_3_350
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(373737..374516)
DNA (780bp) protein (260aa)
Gluconate 5-dehydrogenase 2 n=1 Tax=Achromobacter piechaudii HLE RepID=J4YNM4_9BURK rbh
Gluconate 5-dehydrogenase 2 {ECO:0000313|EMBL:EJO30671.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter
short chain dehydrogenase rbh
SCNpilot_solid_1_scaffold_3_351
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(374596..375378)
DNA (783bp) protein (261aa)
Probable short chain dehydrogenase n=4 Tax=Bordetella RepID=K0MFX8_BORPB rbh
short chain dehydrogenase rbh
KR domain protein {ECO:0000313|EMBL:KCV67035.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 9
SCNpilot_solid_1_scaffold_3_352
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(375420..376700)
DNA (1281bp) protein (427aa)
Putative ABC transport system, membrane protein n=3 Tax=Bordetella bronchiseptica RepID=K4QLJ2_BORBO rbh
TRAP transporter, DctM subunit {ECO:0000313|EMBL:KCV67010.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bro
ABC transporter rbh
SCNpilot_solid_1_scaffold_3_353
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(376700..377212)
DNA (513bp) protein (171aa)
Putative ABC transport system, membrane protein n=7 Tax=Bordetella RepID=K0MBL8_BORPB
TRAP transporter, DctQ-like membrane protein {ECO:0000313|EMBL:KCV66995.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="
ABC transporter membrane protein
SCNpilot_solid_1_scaffold_3_354
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(377300..378319)
DNA (1020bp) protein (340aa)
Putative ABC transport system, solute-binding protein n=1 Tax=Bordetella bronchiseptica D445 RepID=K4TTI1_BORBO rbh
ABC transporter substrate-binding protein rbh
TRAP transporter solute receptor, DctP family {ECO:0000313|EMBL:KDD49233.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source=
SCNpilot_solid_1_scaffold_3_355
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378400..378795)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Bordetella bronchiseptica 253 RepID=K4QEL9_BORBO
hypothetical protein
ChrR cupin-like domain protein {ECO:0000313|EMBL:KCV67048.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bro
SCNpilot_solid_1_scaffold_3_356
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(378834..379748)
DNA (915bp) protein (305aa)
Putative hydrolase n=2 Tax=Bordetella bronchiseptica RepID=K0MFS9_BORBM rbh
hydrolase rbh
FAH family protein {ECO:0000313|EMBL:KDD49223.1}; TaxID=1331242 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica
SCNpilot_solid_1_scaffold_3_357
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(379783..380463)
DNA (681bp) protein (227aa)
Putative GntR-family transcriptional regulator n=1 Tax=Bordetella parapertussis (strain Bpp5) RepID=K0M8J9_BORPB rbh
GntR-family transcriptional regulator rbh
Putative GntR-family transcriptional regulator {ECO:0000313|EMBL:CCJ48609.1}; TaxID=1208660 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source
Displaying items 331-360 of 445 in total

View Taxonomy