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SCNPILOT_SOLID_1_TRIM150_Sphingobacteriales_42_11

In projects: SCNPILOT_SOLID_1_TRIM150

Consensus taxonomy: Sphingobacteriales  →  Sphingobacteriia  →  Bacteroidetes  →  Bacteria

Metagenomic Context

Parent: SCNPILOT_SOLID_1_TRIM150_UNK

Properties

Avg. coverage: 11.36 Longest contig: 223.48 Kbp Bin length: 5.14 Mbp GC content: 42.47 %
Contigs count: 122 Features count: 4418 rRNAs count: 0 tRNAs count: 40

Genome completeness

near complete RP 53 / 55 MC: 1 BSCG 51 / 51 ASCG 12 / 38
Displaying items 51-100 of 122 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_solids1_trim150_scaffold_578
Order: Sphingobacteriales (61.9%)
21 27761 bp 43.33 11.14 86.70
scnpilot_solids1_trim150_scaffold_511
Phylum: Bacteroidetes (78.43%)
52 53466 bp 42.23 11.15 88.87
scnpilot_solids1_trim150_scaffold_259
Phylum: Bacteroidetes (55.56%)
36 52555 bp 41.69 11.15 89.59
scnpilot_solids1_trim150_scaffold_175
Order: Sphingobacteriales (53.7%)
55 65186 bp 42.24 11.17 87.77
scnpilot_solids1_trim150_scaffold_150
Order: Sphingobacteriales (69.49%)
61 73662 bp 42.15 11.18 88.25
scnpilot_solids1_trim150_scaffold_462
Phylum: Bacteroidetes (72.41%)
29 34209 bp 43.04 11.20 90.32
scnpilot_solids1_trim150_scaffold_90
Order: Sphingobacteriales (61.6%)
127 161546 bp 42.73 11.21 91.08
scnpilot_solids1_trim150_scaffold_394
Order: Sphingobacteriales (71.43%)
38 38792 bp 42.03 11.21 86.55
scnpilot_solids1_trim150_scaffold_135
Phylum: Bacteroidetes (70.77%)
65 79443 bp 42.92 11.23 88.15
scnpilot_solids1_trim150_scaffold_489
Order: Sphingobacteriales (67.86%)
28 32299 bp 42.87 11.24 85.38
scnpilot_solids1_trim150_scaffold_31
Order: Sphingobacteriales (75.97%)
156 189856 bp 42.32 11.24 88.90
scnpilot_solids1_trim150_scaffold_57
Order: Sphingobacteriales (58.18%)
110 132793 bp 42.02 11.24 89.78
scnpilot_solids1_trim150_scaffold_396
Order: Sphingobacteriales (80%)
30 38570 bp 41.87 11.25 87.05
scnpilot_solids1_trim150_scaffold_13798
Order: Sphingobacteriales (75%)
4 2293 bp 40.08 11.25 79.68
scnpilot_solids1_trim150_scaffold_95
Order: Sphingobacteriales (54.9%)
103 101858 bp 42.17 11.27 86.64
scnpilot_solids1_trim150_scaffold_986
Order: Sphingobacteriales (60%)
20 17971 bp 42.97 11.28 86.64
scnpilot_solids1_trim150_scaffold_273
Order: Sphingobacteriales (81.03%)
59 62057 bp 41.35 11.28 90.79
scnpilot_solids1_trim150_scaffold_430
Order: Sphingobacteriales (77.78%)
30 36592 bp 41.38 11.31 91.30
scnpilot_solids1_trim150_scaffold_151
Order: Sphingobacteriales (56.45%)
62 72732 bp 43.05 11.32 91.55
scnpilot_solids1_trim150_scaffold_184
Order: Sphingobacteriales (54.17%)
96 118378 bp 42.71 11.35 88.90
scnpilot_solids1_trim150_scaffold_627
Order: Sphingobacteriales (60%)
25 29183 bp 42.32 11.36 89.16
scnpilot_solids1_trim150_scaffold_397
Order: Sphingobacteriales (75.61%)
41 44727 bp 42.59 11.37 85.73
scnpilot_solids1_trim150_scaffold_107
Phylum: Bacteroidetes (89.6%)
125 161828 bp 43.04 11.39 88.52
scnpilot_solids1_trim150_scaffold_243
Phylum: Bacteroidetes (65.52%)
59 61633 bp 40.91 11.43 91.64
scnpilot_solids1_trim150_scaffold_52
Order: Sphingobacteriales (60.68%)
117 137834 bp 42.54 11.43 87.98
scnpilot_solids1_trim150_scaffold_390
Order: Sphingobacteriales (56.1%)
41 39184 bp 42.98 11.49 84.42
scnpilot_solids1_trim150_scaffold_945
Order: Sphingobacteriales (80%)
15 18556 bp 42.21 11.49 89.03
scnpilot_solids1_trim150_scaffold_429
Phylum: Bacteroidetes (59.46%)
37 36639 bp 41.68 11.52 87.73
scnpilot_solids1_trim150_scaffold_408
Order: Sphingobacteriales (72.22%)
36 38038 bp 43.27 11.54 88.37
scnpilot_solids1_trim150_scaffold_3069
Species: Candidatus Amoebophilus asiaticus (100%)
5 7935 bp 35.75 11.57 83.29
scnpilot_solids1_trim150_scaffold_895
Order: Sphingobacteriales (73.33%)
15 19395 bp 44.16 11.58 88.74
scnpilot_solids1_trim150_scaffold_1190
Phylum: Bacteroidetes (53.85%)
13 15173 bp 41.65 11.58 81.07
scnpilot_solids1_trim150_scaffold_893
Order: Sphingobacteriales (55%)
20 19407 bp 42.26 11.62 83.88
scnpilot_solids1_trim150_scaffold_638
Phylum: Bacteroidetes (70.59%)
17 25637 bp 41.61 11.62 73.49
scnpilot_solids1_trim150_scaffold_466
Phylum: Bacteroidetes (73.33%)
30 34058 bp 44.79 11.65 86.52
scnpilot_solids1_trim150_scaffold_1693
Order: Sphingobacteriales (50%)
10 11631 bp 42.38 11.65 84.42
scnpilot_solids1_trim150_scaffold_889
Phylum: Bacteroidetes (75%)
16 19442 bp 41.12 11.70 86.55
scnpilot_solids1_trim150_scaffold_590
Order: Sphingobacteriales (66.67%)
19 27328 bp 43.29 11.73 88.37
scnpilot_solids1_trim150_scaffold_8432
Species: Chitinophaga pinensis (66.67%)
3 3279 bp 44.28 11.76 86.09
scnpilot_solids1_trim150_scaffold_4545
Phylum: Bacteroidetes (77.78%)
9 5177 bp 38.28 11.82 77.54
scnpilot_solids1_trim150_scaffold_278
Phylum: Bacteroidetes (79.07%)
43 50348 bp 42.53 11.82 86.50
scnpilot_solids1_trim150_scaffold_119
Order: Sphingobacteriales (52.44%)
82 87877 bp 43.94 11.84 89.50
scnpilot_solids1_trim150_scaffold_199
Order: Sphingobacteriales (60.34%)
59 84100 bp 42.98 11.84 87.12
scnpilot_solids1_trim150_scaffold_1330
Phylum: Bacteroidetes (58.33%)
12 13991 bp 43.81 11.88 80.92
scnpilot_solids1_trim150_scaffold_667
Order: Sphingobacteriales (76.19%)
21 24859 bp 41.98 11.89 92.25
scnpilot_solids1_trim150_scaffold_716
Order: Sphingobacteriales (65.22%)
23 23479 bp 43.66 11.90 85.88
scnpilot_solids1_trim150_scaffold_226
Phylum: Bacteroidetes (68.52%)
54 57836 bp 39.92 11.95 80.71
scnpilot_solids1_trim150_scaffold_260
Order: Sphingobacteriales (51.52%)
33 55611 bp 42.65 11.95 92.13
scnpilot_solids1_trim150_scaffold_455
Phylum: Bacteroidetes (80.77%)
27 34895 bp 42.07 11.96 91.13
scnpilot_solids1_trim150_scaffold_172
Order: Sphingobacteriales (68%)
50 66225 bp 43.11 11.98 88.87
Displaying items 51-100 of 122 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.