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SCNPILOT_CONT_300_BF_Sphingomonadales_65_9_partial

SCNPILOT_CONT_300_BF_Sphingomonas_66_10
In projects: SCNPILOT_CONT_300_BF  |  SCN_92

Consensus taxonomy: Sphingomonas  →  Sphingomonadales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

from ggkbase

Displaying items 1-50 of 171 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCNpilot_cont_300_bf_scaffold_3193
Genus: Sphingomonas (70.59%)
17 12309 bp 65.04 9.85 85.30
SCNpilot_cont_300_bf_scaffold_3225
Genus: Sphingobium (60%)
5 6572 bp 65.06 9.13 92.94
SCNpilot_cont_300_bf_scaffold_3334
Order: Sphingomonadales (78.57%)
14 12384 bp 61.88 8.13 81.69
SCNpilot_cont_300_bf_scaffold_3337
Genus: Sphingomonas (60%)
15 11126 bp 67.12 9.18 93.83
SCNpilot_cont_300_bf_scaffold_3376
Order: Sphingomonadales (50%)
12 11569 bp 59.71 7.38 83.32
SCNpilot_cont_300_bf_scaffold_3382
Order: Sphingomonadales (60%)
10 9036 bp 66.37 7.81 87.45
SCNpilot_cont_300_bf_scaffold_3609
Order: Sphingomonadales (60%)
10 7448 bp 59.18 9.17 67.59
SCNpilot_cont_300_bf_scaffold_3732
Class: Alphaproteobacteria (73.68%)
19 19593 bp 61.74 7.96 82.65
SCNpilot_cont_300_bf_scaffold_7243
Genus: Sphingobium (100%)
5 6632 bp 70.19 10.18 97.75
SCNpilot_cont_300_bf_scaffold_7451
Order: Sphingomonadales (80%)
15 9951 bp 66.81 9.41 96.86
SCNpilot_cont_300_bf_scaffold_6492
Species: Sphingomonas paucimobilis (75%)
4 4153 bp 62.12 6.53 94.92
SCNpilot_cont_300_bf_scaffold_6557
Genus: Sphingomonas (80%)
5 4127 bp 66.88 9.97 96.03
SCNpilot_cont_300_bf_scaffold_1012
Genus: Sphingomonas (66.97%)
109 110003 bp 67.43 9.88 88.83
SCNpilot_cont_300_bf_scaffold_1061
Genus: Sphingomonas (60.87%)
23 24133 bp 65.95 9.89 93.30
SCNpilot_cont_300_bf_scaffold_1063
Order: Sphingomonadales (90.32%)
31 34108 bp 67.93 10.34 93.94
SCNpilot_cont_300_bf_scaffold_1067
Order: Sphingomonadales (96.67%)
30 34226 bp 67.91 10.08 91.57
SCNpilot_cont_300_bf_scaffold_1115
Order: Sphingomonadales (68.75%)
16 17017 bp 64.14 8.86 87.51
SCNpilot_cont_300_bf_scaffold_1154
Genus: Sphingomonas (87.5%)
40 36060 bp 64.82 7.58 88.95
SCNpilot_cont_300_bf_scaffold_1168
Genus: Sphingomonas (72.41%)
29 25218 bp 67.25 10.71 89.17
SCNpilot_cont_300_bf_scaffold_1176
Genus: Sphingobium (70.59%)
17 17253 bp 62.38 7.67 90.23
SCNpilot_cont_300_bf_scaffold_1193
Genus: Sphingomonas (76.67%)
30 39404 bp 66.40 10.29 87.61
SCNpilot_cont_300_bf_scaffold_1198
Genus: Sphingomonas (85.71%)
14 15723 bp 68.85 11.32 93.57
SCNpilot_cont_300_bf_scaffold_1217
Species: Sphingomonas taxi (73.33%)
15 15410 bp 64.89 9.72 87.24
SCNpilot_cont_300_bf_scaffold_1231
Genus: Sphingobium (66.67%)
15 22583 bp 69.41 10.20 93.31
SCNpilot_cont_300_bf_scaffold_1247
Genus: Sphingomonas (82.35%)
51 47174 bp 66.92 10.42 92.72
SCNpilot_cont_300_bf_scaffold_1267
Order: Sphingomonadales (80%)
30 33234 bp 68.41 10.23 94.70
SCNpilot_cont_300_bf_scaffold_1288
Genus: Sphingomonas (83.33%)
30 28491 bp 68.86 10.61 92.08
SCNpilot_cont_300_bf_scaffold_1298
Order: Sphingomonadales (81.25%)
16 14388 bp 61.78 7.80 90.85
SCNpilot_cont_300_bf_scaffold_1330
Genus: Sphingomonas (78.05%)
41 38258 bp 67.62 9.44 90.91
SCNpilot_cont_300_bf_scaffold_1337
Genus: Sphingomonas (80%)
30 32422 bp 67.43 9.95 90.12
SCNpilot_cont_300_bf_scaffold_1403
Genus: Sphingomonas (87.1%)
31 30338 bp 67.22 9.47 91.34
SCNpilot_cont_300_bf_scaffold_1427
Genus: Sphingomonas (64.29%)
28 30770 bp 65.94 9.30 92.94
SCNpilot_cont_300_bf_scaffold_1445
Species: Sphingomonas taxi (50%)
18 15759 bp 65.21 10.88 82.51
SCNpilot_cont_300_bf_scaffold_1486
Genus: Sphingomonas (60.29%)
68 65130 bp 66.71 10.41 90.78
SCNpilot_cont_300_bf_scaffold_1491
Order: Sphingomonadales (100%)
33 28977 bp 67.00 10.04 91.41
SCNpilot_cont_300_bf_scaffold_1498
Species: Sphingomonas taxi (88.89%)
9 12474 bp 66.88 9.01 95.50
SCNpilot_cont_300_bf_scaffold_1510
Order: Sphingomonadales (60.71%)
28 22104 bp 66.56 9.37 90.76
SCNpilot_cont_300_bf_scaffold_1555
Genus: Sphingomonas (86.49%)
37 37675 bp 65.65 8.89 91.39
SCNpilot_cont_300_bf_scaffold_1559
Order: Sphingomonadales (52.63%)
19 23655 bp 65.41 8.76 87.01
SCNpilot_cont_300_bf_scaffold_1580
Order: Sphingomonadales (51.72%)
29 19892 bp 63.92 8.73 78.39
SCNpilot_cont_300_bf_scaffold_1588
Order: Sphingomonadales (50%)
34 24766 bp 62.23 7.82 81.49
SCNpilot_cont_300_bf_scaffold_1590
Order: Sphingomonadales (84.21%)
19 20762 bp 67.08 9.88 91.67
SCNpilot_cont_300_bf_scaffold_1609
Genus: Sphingobium (66.67%)
27 20511 bp 63.12 8.64 82.17
SCNpilot_cont_300_bf_scaffold_1638
Order: Sphingomonadales (80%)
40 48876 bp 65.87 9.39 91.84
SCNpilot_cont_300_bf_scaffold_1642
Genus: Sphingomonas (65.52%)
29 22035 bp 67.08 10.06 88.17
SCNpilot_cont_300_bf_scaffold_1655
Genus: Sphingopyxis (62.5%)
16 14235 bp 67.36 9.49 93.74
SCNpilot_cont_300_bf_scaffold_1869
Class: Alphaproteobacteria (81.82%)
11 10204 bp 61.47 7.90 68.71
SCNpilot_cont_300_bf_scaffold_1886
Order: Sphingomonadales (60%)
10 11398 bp 59.80 7.91 84.07
SCNpilot_cont_300_bf_scaffold_1956
Order: Sphingomonadales (66.67%)
18 18299 bp 62.39 8.23 81.64
SCNpilot_cont_300_bf_scaffold_9116
Order: Sphingomonadales (60%)
5 3411 bp 69.89 7.14 99.03
Displaying items 1-50 of 171 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.