ggKbase home page

SCN18_26_2_15_R5_B_Alphaproteobacteria_66_27

In projects: SCN18_26_2_15_R5_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated  |  SCN_92

Consensus taxonomy: Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

SCN18_26_2_15_R5_B_metabat2_012

Displaying items 151-200 of 445 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_26_2_15_R5_B_scaffold_289
Class: Alphaproteobacteria (58.82%)
51 51406 bp 66.02 27.33 95.13
SCN18_26_2_15_R5_B_scaffold_1303
Phylum: Proteobacteria (90.91%)
11 10574 bp 66.08 27.31 95.38
SCN18_26_2_15_R5_B_scaffold_1560
Class: Alphaproteobacteria (63.64%)
11 8907 bp 64.02 27.28 96.77
SCN18_26_2_15_R5_B_scaffold_954
Class: Alphaproteobacteria (73.33%)
15 14494 bp 66.31 27.27 96.39
SCN18_26_2_15_R5_B_scaffold_746
Species: Magnetospirillum gryphiswaldense_SCNpilot_P_inoc_Magnetospirillum_64_120 (60%)
15 19108 bp 66.90 27.26 96.60
SCN18_26_2_15_R5_B_scaffold_2419
Class: Alphaproteobacteria (57.14%)
7 6107 bp 65.58 27.26 96.28
SCN18_26_2_15_R5_B_scaffold_147
Class: Alphaproteobacteria (64.77%)
88 101792 bp 66.00 27.24 93.08
SCN18_26_2_15_R5_B_scaffold_1985
Class: Alphaproteobacteria (50%)
6 7256 bp 67.53 27.23 85.01
SCN18_26_2_15_R5_B_scaffold_551
Class: Alphaproteobacteria (50%)
26 26015 bp 64.70 27.23 86.82
SCN18_26_2_15_R5_B_scaffold_1329
Class: Alphaproteobacteria (72.73%)
11 10322 bp 64.43 27.22 90.16
SCN18_26_2_15_R5_B_scaffold_612
Class: Alphaproteobacteria (60.87%)
23 23045 bp 65.64 27.21 94.34
SCN18_26_2_15_R5_B_scaffold_1545
Class: Alphaproteobacteria (88.89%)
9 9007 bp 64.91 27.20 94.59
SCN18_26_2_15_R5_B_scaffold_1354
Class: Alphaproteobacteria (70%)
10 10159 bp 65.68 27.20 93.32
SCN18_26_2_15_R5_B_scaffold_877
Class: Alphaproteobacteria (52.38%)
21 15758 bp 66.63 27.20 96.83
SCN18_26_2_15_R5_B_scaffold_3869
Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)
2 4115 bp 67.31 27.19 100.02
SCN18_26_2_15_R5_B_scaffold_435
Class: Alphaproteobacteria (68.42%)
38 33845 bp 66.64 27.19 89.69
SCN18_26_2_15_R5_B_scaffold_5256
Class: Alphaproteobacteria (50%)
4 3213 bp 67.51 27.17 95.70
SCN18_26_2_15_R5_B_scaffold_464
Phylum: Proteobacteria (78.79%)
33 31500 bp 65.52 27.16 92.34
SCN18_26_2_15_R5_B_scaffold_666
Class: Alphaproteobacteria (81.48%)
27 21242 bp 66.00 27.15 93.27
SCN18_26_2_15_R5_B_scaffold_1243
Class: Alphaproteobacteria (63.64%)
11 11157 bp 65.64 27.13 93.09
SCN18_26_2_15_R5_B_scaffold_756
Phylum: Proteobacteria (71.43%)
21 18764 bp 66.29 27.13 94.46
SCN18_26_2_15_R5_B_scaffold_1025
Class: Alphaproteobacteria (85.71%)
14 13446 bp 66.55 27.12 93.40
SCN18_26_2_15_R5_B_scaffold_301
Class: Alphaproteobacteria (62%)
50 49502 bp 66.53 27.12 94.03
SCN18_26_2_15_R5_B_scaffold_1388
Class: Alphaproteobacteria (60%)
10 9939 bp 64.83 27.12 97.62
SCN18_26_2_15_R5_B_scaffold_179
Class: Alphaproteobacteria (68.42%)
76 82266 bp 65.66 27.11 92.88
SCN18_26_2_15_R5_B_scaffold_3302
Phylum: Proteobacteria (50%)
4 4712 bp 66.17 27.09 89.77
SCN18_26_2_15_R5_B_scaffold_3110
Class: Alphaproteobacteria (80%)
5 4958 bp 67.93 27.08 96.63
SCN18_26_2_15_R5_B_scaffold_2910
Species: CN-SCN_Phenylobacterium_31x (57.14%)
7 5223 bp 66.51 27.08 92.94
SCN18_26_2_15_R5_B_scaffold_644
Class: Alphaproteobacteria (61.9%)
21 21781 bp 67.22 27.08 94.71
SCN18_26_2_15_R5_B_scaffold_8791
Class: Alphaproteobacteria (66.67%)
3 2017 bp 64.80 27.07 82.85
SCN18_26_2_15_R5_B_scaffold_1689
Phylum: Proteobacteria (77.78%)
9 8300 bp 66.01 27.05 91.41
SCN18_26_2_15_R5_B_scaffold_874
Species: SCNPILOT_SOLID2_TRIM150_Afipia_61_20 (53.33%)
15 15876 bp 66.19 27.04 88.76
SCN18_26_2_15_R5_B_scaffold_932
Class: Alphaproteobacteria (65%)
20 14821 bp 64.34 27.03 91.55
SCN18_26_2_15_R5_B_scaffold_725
Class: Alphaproteobacteria (65%)
20 19549 bp 66.22 27.03 93.66
SCN18_26_2_15_R5_B_scaffold_401
Class: Alphaproteobacteria (62.86%)
35 36182 bp 65.67 26.98 91.67
SCN18_26_2_15_R5_B_scaffold_614
Order: Rhizobiales (62.96%)
27 22918 bp 66.00 26.98 93.90
SCN18_26_2_15_R5_B_scaffold_388
Class: Alphaproteobacteria (74.42%)
43 37908 bp 65.47 26.98 94.56
SCN18_26_2_15_R5_B_scaffold_211
Class: Alphaproteobacteria (78.79%)
66 68914 bp 64.98 26.97 93.06
SCN18_26_2_15_R5_B_scaffold_1004
Phylum: Proteobacteria (58.33%)
12 13702 bp 65.67 26.96 91.98
SCN18_26_2_15_R5_B_scaffold_1035
Class: Alphaproteobacteria (58.33%)
12 13334 bp 67.15 26.96 91.08
SCN18_26_2_15_R5_B_scaffold_2389
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
3 6176 bp 69.04 26.96 98.90
SCN18_26_2_15_R5_B_scaffold_3400
Order: Rhizobiales (66.67%)
6 4596 bp 66.60 26.93 91.91
SCN18_26_2_15_R5_B_scaffold_1806
Class: Alphaproteobacteria (83.33%)
6 7866 bp 67.30 26.93 95.39
SCN18_26_2_15_R5_B_scaffold_1212
Class: Alphaproteobacteria (80%)
5 11441 bp 66.01 26.92 94.71
SCN18_26_2_15_R5_B_scaffold_2560
Class: Alphaproteobacteria (100%)
7 5784 bp 66.58 26.92 96.94
SCN18_26_2_15_R5_B_scaffold_2043
Class: Alphaproteobacteria (50%)
6 7128 bp 64.63 26.89 84.60
SCN18_26_2_15_R5_B_scaffold_1218
Phylum: Proteobacteria (72.22%)
18 11384 bp 64.72 26.87 93.64
SCN18_26_2_15_R5_B_scaffold_568
Order: Rhodospirillales (52.38%)
21 25240 bp 65.49 26.86 94.18
SCN18_26_2_15_R5_B_scaffold_344
Class: Alphaproteobacteria (60.87%)
46 43645 bp 65.59 26.85 93.72
SCN18_26_2_15_R5_B_scaffold_872
Order: Rhizobiales (70.59%)
17 15942 bp 66.46 26.84 94.83
Displaying items 151-200 of 445 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.