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SCN18_14_9_16_R1_B_Rhizobiales_65_9

In projects: SCN18_14_9_16_R1_B  |  scn18_genomes  |  SCN_ET-SeqDB_Dereplicated  |  SCN_92

Consensus taxonomy: Rhizobiales  →  Alphaproteobacteria  →  Proteobacteria  →  Bacteria

Description

Extracted from SCN18_14_9_16_R1_B_abawaca_094

Displaying items 251-300 of 1208 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
SCN18_14_9_16_R1_B_scaffold_11834
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
4 2393 bp 69.29 9.90 95.40
SCN18_14_9_16_R1_B_scaffold_1598
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (57.14%)
14 13788 bp 66.21 9.90 90.06
SCN18_14_9_16_R1_B_scaffold_9268
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
2 3095 bp 65.36 9.89 94.02
SCN18_14_9_16_R1_B_scaffold_4410
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (57.14%)
7 6231 bp 66.86 9.89 91.82
SCN18_14_9_16_R1_B_scaffold_2828
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (71.43%)
14 14013 bp 67.02 9.89 95.14
SCN18_14_9_16_R1_B_scaffold_13647
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (100%)
2 2034 bp 66.76 9.88 69.47
SCN18_14_9_16_R1_B_scaffold_3282
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (60%)
10 7911 bp 64.97 9.88 91.81
SCN18_14_9_16_R1_B_scaffold_3340
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
10 7788 bp 63.73 9.88 86.79
SCN18_14_9_16_R1_B_scaffold_10767
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
4 4373 bp 66.98 9.88 72.92
SCN18_14_9_16_R1_B_scaffold_6052
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
5 4666 bp 65.71 9.87 88.21
SCN18_14_9_16_R1_B_scaffold_11868
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (75%)
4 2386 bp 62.15 9.87 62.36
SCN18_14_9_16_R1_B_scaffold_7694
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (66.67%)
6 3697 bp 65.62 9.86 73.92
SCN18_14_9_16_R1_B_scaffold_2241
Species: Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 (100%)
12 10633 bp 68.80 9.86 96.66
SCN18_14_9_16_R1_B_scaffold_7498
Order: Rhizobiales (60%)
5 4280 bp 65.02 9.85 83.48
SCN18_14_9_16_R1_B_scaffold_2255
Order: Rhizobiales (83.33%)
12 10580 bp 65.38 9.85 85.86
SCN18_14_9_16_R1_B_scaffold_7061
Order: Rhizobiales (83.33%)
6 4918 bp 68.08 9.85 91.81
SCN18_14_9_16_R1_B_scaffold_8336
Order: Rhizobiales (100%)
8 6260 bp 66.77 9.85 89.90
SCN18_14_9_16_R1_B_scaffold_12841
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
3 3429 bp 67.77 9.84 98.51
SCN18_14_9_16_R1_B_scaffold_15066
Genus: Mesorhizobium (66.67%)
3 1829 bp 70.31 9.84 100.38
SCN18_14_9_16_R1_B_scaffold_17768
Species: SCNPILOT_CONT_500_BF_Rhizobiales_63_22 (50%)
2 1540 bp 67.34 9.84 100.13
SCN18_14_9_16_R1_B_scaffold_3496
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (54.55%)
11 11448 bp 66.55 9.84 92.14
SCN18_14_9_16_R1_B_scaffold_21727
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (66.67%)
3 1250 bp 67.92 9.84 87.60
SCN18_14_9_16_R1_B_scaffold_21235
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
2 1280 bp 65.23 9.84 77.81
SCN18_14_9_16_R1_B_scaffold_2065
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
22 20436 bp 65.11 9.84 86.45
SCN18_14_9_16_R1_B_scaffold_13333
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)
4 2089 bp 68.60 9.84 93.92
SCN18_14_9_16_R1_B_scaffold_5012
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
7 5567 bp 64.06 9.83 94.09
SCN18_14_9_16_R1_B_scaffold_7002
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (71.43%)
7 7154 bp 68.59 9.83 83.83
SCN18_14_9_16_R1_B_scaffold_1756
Order: Rhizobiales (100%)
14 14514 bp 65.37 9.83 84.04
SCN18_14_9_16_R1_B_scaffold_16328
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (100%)
2 1681 bp 65.73 9.82 96.55
SCN18_14_9_16_R1_B_scaffold_13310
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (66.67%)
3 2093 bp 70.09 9.82 93.88
SCN18_14_9_16_R1_B_scaffold_2137
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (50%)
14 11059 bp 65.70 9.81 86.54
SCN18_14_9_16_R1_B_scaffold_3831
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (71.43%)
7 6988 bp 67.50 9.81 93.12
SCN18_14_9_16_R1_B_scaffold_9146
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (60%)
5 3134 bp 63.98 9.81 79.07
SCN18_14_9_16_R1_B_scaffold_4536
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (57.14%)
7 6084 bp 65.30 9.81 93.64
SCN18_14_9_16_R1_B_scaffold_2088
Order: Rhizobiales (81.25%)
16 11256 bp 69.01 9.81 94.78
SCN18_14_9_16_R1_B_scaffold_1338
Order: Rhizobiales (93.75%)
16 15690 bp 64.96 9.80 88.37
SCN18_14_9_16_R1_B_scaffold_1857
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
10 12266 bp 64.72 9.80 91.62
SCN18_14_9_16_R1_B_scaffold_1468
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (50%)
16 14739 bp 64.04 9.78 91.04
SCN18_14_9_16_R1_B_scaffold_10419
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
3 2730 bp 64.84 9.78 89.23
SCN18_14_9_16_R1_B_scaffold_2510
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
9 9774 bp 65.69 9.78 93.43
SCN18_14_9_16_R1_B_scaffold_8293
Order: Rhizobiales (100%)
6 5113 bp 66.58 9.77 88.89
SCN18_14_9_16_R1_B_scaffold_5711
Species: SCNPILOT_EXPT_1000_BF_Afipia_62_8 (50%)
4 4930 bp 61.56 9.77 83.31
SCN18_14_9_16_R1_B_scaffold_3881
Order: Rhizobiales (62.5%)
8 6911 bp 64.64 9.75 87.95
SCN18_14_9_16_R1_B_scaffold_4141
Order: Rhizobiales (87.5%)
8 6545 bp 66.69 9.74 86.77
SCN18_14_9_16_R1_B_scaffold_5038
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (66.67%)
6 5543 bp 65.25 9.74 88.71
SCN18_14_9_16_R1_B_scaffold_9453
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 (75%)
4 5912 bp 69.20 9.74 95.75
SCN18_14_9_16_R1_B_scaffold_18296
Species: SCNPILOT_SOLID2_TRIM150_Rhizobiales_67_9 (100%)
1 1496 bp 66.38 9.73 99.87
SCN18_14_9_16_R1_B_scaffold_2507
Species: Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x (62.5%)
8 9783 bp 65.82 9.72 88.50
SCN18_14_9_16_R1_B_scaffold_25390
Species: SCNPILOT_EXPT_1000_BF_Rhizobiales_69_8_partial (50%)
2 1080 bp 65.37 9.72 79.44
SCN18_14_9_16_R1_B_scaffold_4811
Species: SCNPILOT_CONT_1000_BF_Rhizobiales_65_79 (100%)
7 5771 bp 65.15 9.72 89.93
Displaying items 251-300 of 1208 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.