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berkeley_reactor_200306_biofilm_scaffold_4811

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_4811_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(522..1355)
DNA (834bp) protein (278aa)
HTH-type transcriptional repressor allR Negative regulator of allantoin and glyoxylate utilization operons n=1 Tax=Oceanibaculum indicum P24 RepID=K2JZM8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:KJB93048.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
transcriptional repressor IclR
berkeley_reactor_200306_biofilm_scaffold_4811_2
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1565..2668
DNA (1104bp) protein (368aa)
Cyanuric acid amidohydrolase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICF8_AZOC5
cyanuric acid amidohydrolase
Cyanuric acid amidohydrolase {ECO:0000313|EMBL:BAF89201.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_4811_3
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2758..3765
DNA (1008bp) protein (336aa)
Uncharacterized ABC-type transport periplasmic component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICE7_AZOC5
ABC transporter {ECO:0000313|EMBL:GAN77494.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter periplasmic protein
berkeley_reactor_200306_biofilm_scaffold_4811_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3809..5278
DNA (1470bp) protein (490aa)
Putative ABC-transporter ATP-binding protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICF0_AZOC5
ABC transporter ATP-binding protein
Putative ABC-transporter ATP-binding protein {ECO:0000313|EMBL:BAF89198.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_4811_5
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5275..6333
DNA (1059bp) protein (353aa)
ABC transporter permease 1 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICF3_AZOC5
ABC transporter permease
ABC transporter permease 1 {ECO:0000313|EMBL:BAF89199.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_4811_6
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6330..7235
DNA (906bp) protein (302aa)
ABC transporter permease protein 2 n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8ICF5_AZOC5
ABC transporter permease
ABC transporter permease protein 2 {ECO:0000313|EMBL:BAF89200.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_4811_7
R_Acidobacteria_65_29, Acidobacteria, Bacteria

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7253..8641
DNA (1389bp) protein (463aa)
amidase (EC:3.5.1.-)
amidase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI000361F0A9
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_65_29_curated
berkeley_reactor_200306_biofilm_scaffold_4811_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8657..9457)
DNA (801bp) protein (267aa)
Blr3017 protein n=1 Tax=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) RepID=Q89QV7_BRADU
Uncharacterized protein {ECO:0000313|EMBL:KGJ68556.1}; TaxID=754504 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens SEMIA 5080.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_4811_9
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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9608..10411
DNA (804bp) protein (268aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XL03_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33857.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
berkeley_reactor_200306_biofilm_scaffold_4811_10
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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10701..11282
DNA (582bp) protein (194aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Rhodovulum sp. PH10 RepID=J6JCA7_9RHOB
5-formyltetrahydrofolate cyclo-ligase
berkeley_reactor_200306_biofilm_scaffold_4811_11
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11282..12106
DNA (825bp) protein (275aa)
Uncharacterized protein n=2 Tax=Methylobacterium extorquens RepID=C5AQP9_METEA
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:EHP91004.1}; TaxID=882800 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens DSM 13060.;"
berkeley_reactor_200306_biofilm_scaffold_4811_12
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12408..13154
DNA (747bp) protein (249aa)
Probable transcriptional regulatory protein Snov_3055 n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A799_STAND
hypothetical protein
Probable transcriptional regulatory protein Snov_3055 {ECO:0000256|HAMAP-Rule:MF_00693}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_4811_13
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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13217..13726
DNA (510bp) protein (170aa)
Crossover junction endodeoxyribonuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106335}; EC=3.1.22.4 {ECO:0000256|HAMAP-Rule:MF_00034, ECO:0000256|SAAS:SAAS00106388};; Holliday junction nuclease RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; Holliday junction resolvase RuvC {ECO:0000256|HAMAP-Rule:MF_00034}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IX54_POLGS
ruvC; Crossover junction endodeoxyribonuclease ruvC
berkeley_reactor_200306_biofilm_scaffold_4811_14
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13738..15021)
DNA (1284bp) protein (428aa)
Major facilitator family protein n=1 Tax=Oceanibaculum indicum P24 RepID=K2JLZ3_9PROT
MFS transporter {ECO:0000313|EMBL:KJB95262.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
major facilitator family protein
berkeley_reactor_200306_biofilm_scaffold_4811_15
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15403..16020
DNA (618bp) protein (206aa)
Holliday junction ATP-dependent DNA helicase RuvA {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058935}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_00031, ECO:0000256|SAAS:SAAS00058896};; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Bradyrhizobium sp. S23321 RepID=I0G0P5_9BRAD
ruvA; holliday junction ATP-dependent DNA helicase RuvA
berkeley_reactor_200306_biofilm_scaffold_4811_16
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16017..17084
DNA (1068bp) protein (356aa)
ruvB; Holliday junction DNA helicase RuvB (EC:3.1.22.4)
Holliday junction ATP-dependent DNA helicase RuvB {ECO:0000255|HAMAP-Rule:MF_00016}; EC=3.6.4.12 {ECO:0000255|HAMAP-Rule:MF_00016};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
Holliday junction DNA helicase RuvB n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030B7986
berkeley_reactor_200306_biofilm_scaffold_4811_17
unknown

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comp(17171..17308)
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying 17 items

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