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berkeley_reactor_200306_biofilm_scaffold_150155

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_150155_1
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..791
DNA (789bp) protein (263aa)
Putative peptidoglycan-binding domain-containing protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4G9_9RHIZ
Putative peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:EIM31111.1}; Flags: Precursor;; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
berkeley_reactor_200306_biofilm_scaffold_150155_2
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1085..2341
DNA (1257bp) protein (419aa)
UPI0003CFDD62 related cluster n=1 Tax=unknown RepID=UPI0003CFDD62
Uncharacterized protein {ECO:0000313|EMBL:ESZ27993.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150155_3
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2357..3025)
DNA (669bp) protein (223aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI000379825D
esterase
Putative esterase {ECO:0000313|EMBL:AEI08040.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
berkeley_reactor_200306_biofilm_scaffold_150155_4
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3056..3754
DNA (699bp) protein (233aa)
ABC transporter ATP-binding protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030C8A0A
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KFC68128.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_150155_5
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3985..4902
DNA (918bp) protein (306aa)
Putative ABC transporter inner membrane component n=1 Tax=Roseobacter litoralis (strain ATCC 49566 / DSM 6996 / JCM 21268 / NBRC 15278 / OCh 149) RepID=F7Z9R4_ROSLO
ABC transporter permease {ECO:0000313|EMBL:KJC50531.1}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_150155_6
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4902..5792
DNA (891bp) protein (297aa)
Sugar ABC transporter permease n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FCK2_9RHIZ
Bradyrhizobium elkanii strain UASWS1015 Contig186, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44197.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
sugar ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_150155_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5839..7362
DNA (1524bp) protein (508aa)
ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FA03_9RHIZ
Bradyrhizobium elkanii strain UASWS1015 Contig186, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44196.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_150155_8
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7496..9049
DNA (1554bp) protein (518aa)
xylB; xylulose kinase (EC:2.7.1.17)
Xylulose kinase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FC86_9RHIZ
Xylulose kinase {ECO:0000313|EMBL:ESX64389.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
berkeley_reactor_200306_biofilm_scaffold_150155_9
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9116..10441
DNA (1326bp) protein (442aa)
glycerol 1-phosphate dehydrogenase (L-arabinose utilization protein) protein (EC:1.1.1.261)
Glycerol 1-phosphate dehydrogenase (L-arabinose utilization protein) protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FD44_9RHIZ
Glycerol 1-phosphate dehydrogenase (L-arabinose utilization protein) protein {ECO:0000313|EMBL:ESX64390.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
berkeley_reactor_200306_biofilm_scaffold_150155_10
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10737..11540
DNA (804bp) protein (268aa)
Putative hydrolase protein n=1 Tax=Fulvimarina pelagi HTCC2506 RepID=Q0FXF9_9RHIZ
Bradyrhizobium elkanii strain UASWS1015 Contig186, whole genome shotgun sequence {ECO:0000313|EMBL:KIU44194.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
HAD family hydrolase
berkeley_reactor_200306_biofilm_scaffold_150155_11
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11657..12709
DNA (1053bp) protein (351aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU000439}; EC=1.1.1.94 {ECO:0000256|RuleBase:RU000439};; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
UPI0003CE63F7 related cluster n=1 Tax=unknown RepID=UPI0003CE63F7
gpsA; glycerol-3-phosphate dehydrogenase [NAD(P)+]
berkeley_reactor_200306_biofilm_scaffold_150155_12
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12739..13731
DNA (993bp) protein (331aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FA07_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ESX64393.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150155_13
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13738..14265)
DNA (528bp) protein (176aa)
Putative ring-cleavage extradiol dioxygenase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YXM2_9RHIZ
Putative ring-cleavage extradiol dioxygenase {ECO:0000313|EMBL:EIM28714.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
glyoxalase
berkeley_reactor_200306_biofilm_scaffold_150155_14
Pantoea sp. GM01, Pantoea, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14321..14731)
DNA (411bp) protein (137aa)
Putative membrane protein n=1 Tax=Pantoea sp. GM01 RepID=J2UIV3_9ENTR
Putative membrane protein {ECO:0000313|EMBL:EJL91382.1}; TaxID=1144320 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pantoea.;" source="Pantoea sp. GM01.;"
LysR family transcriptional regulator
berkeley_reactor_200306_biofilm_scaffold_150155_15
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14859..15785
DNA (927bp) protein (309aa)
Putative transcriptional regulatory protein, LysR family n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z4D3_9BRAD
putative transcriptional regulatory protein, LysR family
Putative transcriptional regulatory protein, LysR family {ECO:0000313|EMBL:BAM88009.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
berkeley_reactor_200306_biofilm_scaffold_150155_16
Mesorhizobium sp. LNJC395A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15796..16809)
DNA (1014bp) protein (338aa)
UPI0003CE8D09 related cluster n=1 Tax=unknown RepID=UPI0003CE8D09
Uncharacterized protein {ECO:0000313|EMBL:ESY09655.1}; TaxID=1287275 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC395A00.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150155_17
Methylobacterium aquaticum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17149..17766)
DNA (618bp) protein (206aa)
Cob(I)alamin adenosyltransferase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UH16_METS4
BtuR protein {ECO:0000313|EMBL:BAQ45172.1}; TaxID=270351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium aquaticum.;"
cob(I)alamin adenosyltransferase
berkeley_reactor_200306_biofilm_scaffold_150155_18
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17763..18275)
DNA (513bp) protein (171aa)
cobP; Bifunctional adenosylcobalamin biosynthesis protein cobP (EC:2.7.1.156 2.7.7.62)
Bifunctional adenosylcobalamin biosynthesis protein cobP {ECO:0000313|EMBL:CAX23705.1}; EC=2.7.1.156 {ECO:0000313|EMBL:CAX23705.1};; EC=2.7.7.62 {ECO:0000313|EMBL:CAX23705.1};; TaxID=661410 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain DSM 5838 / DM4) (Methylobacterium; dichloromethanicum (strain DM4)).;"
adenosylcobinamide kinase n=1 Tax=Methylobacterium sp. 88A RepID=UPI00036B9C8A
berkeley_reactor_200306_biofilm_scaffold_150155_19
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18284..18643)
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z011_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EIM29553.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
membrane protein
berkeley_reactor_200306_biofilm_scaffold_150155_20
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19041..19409
DNA (369bp) protein (123aa)
Putative metal-binding protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YWU2_9RHIZ
Putative metal-binding protein {ECO:0000313|EMBL:EIM28434.1}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_150155_21
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19406..20440
DNA (1035bp) protein (345aa)
CobW n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI0003757409
CobW
CobW {ECO:0000313|EMBL:AHB48209.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
berkeley_reactor_200306_biofilm_scaffold_150155_22
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20752..24099
DNA (3348bp) protein (1116aa)
Cobaltochelatase, CobN subunit {ECO:0000313|EMBL:EFH11973.1}; EC=6.6.1.2 {ECO:0000313|EMBL:EFH11973.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
Cobaltochelatase cobN subunit (EC:6.6.1.2)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI00030B2CBF
Displaying 22 items

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