ggKbase home page

berkeley_reactor_200306_biofilm_scaffold_154241

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_154241_1
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..199
DNA (198bp) protein (66aa)
DNA translocase ftsK n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AEP9_RHIFH
ftsK; DNA translocase ftsK
DNA translocase FtsK {ECO:0000313|EMBL:CCE99531.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
berkeley_reactor_200306_biofilm_scaffold_154241_2
Burkholderia sp. Ch1-1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

318..1847
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI00037C537B
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:EIF33436.1}; Flags: Precursor;; TaxID=243261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. Ch1-1.;"
cyclic nucleotide-binding domain protein
berkeley_reactor_200306_biofilm_scaffold_154241_trna_1
unknown

Not on your lists

1883..1964
DNA (82bp)
transferRNA Leu
berkeley_reactor_200306_biofilm_scaffold_154241_3
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2002..2268)
DNA (267bp) protein (89aa)
Type IV pilus assembly PilZ n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Y4E6_9RHIZ
type IV pilus assembly PilZ
Type IV pilus assembly PilZ {ECO:0000313|EMBL:EMS41736.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
berkeley_reactor_200306_biofilm_scaffold_154241_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2606..3328
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain TIE-1) RepID=B3Q770_RHOPT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACE98758.1}; Flags: Precursor;; TaxID=395960 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain TIE-1).;"
berkeley_reactor_200306_biofilm_scaffold_154241_5
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3458..4480
DNA (1023bp) protein (341aa)
rbsR3; LacI family transcriptional regulator (EC:5.1.1.1)
DNA-binding transcriptional repressor of ribose metabolism n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI27_9RHIZ
DNA-binding transcriptional repressor of ribose metabolism {ECO:0000313|EMBL:CCV16005.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
berkeley_reactor_200306_biofilm_scaffold_154241_6
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4646..5995)
DNA (1350bp) protein (450aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036299B9
Uncharacterized protein {ECO:0000313|EMBL:CCV16004.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Thi4 family
berkeley_reactor_200306_biofilm_scaffold_154241_7
Enterobacter cloacae, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6108..7364)
DNA (1257bp) protein (419aa)
Uncharacterized protein n=1 Tax=Enterobacter hormaechei ATCC 49162 RepID=F5RUC3_9ENTR
signal peptide protein
Signal peptide protein {ECO:0000313|EMBL:AJB70177.1}; TaxID=550 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cloacae.;"
berkeley_reactor_200306_biofilm_scaffold_154241_8
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7590..8594)
DNA (1005bp) protein (335aa)
Putative D-ribose-binding protein {ECO:0000313|EMBL:CCV16002.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CCV16002.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
rbsB3; D-ribose-binding protein RbsB (EC:3.6.3.17)
Putative D-ribose-binding protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FFD3_9RHIZ
berkeley_reactor_200306_biofilm_scaffold_154241_9
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8724..9794)
DNA (1071bp) protein (357aa)
Fused L-arabinose transporter subunits of ABC superfamily: membrane components n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI41_9RHIZ
Fused L-arabinose transporter subunits of ABC superfamily: membrane components {ECO:0000313|EMBL:CCV16001.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
rbsC3; ribose transport system permease RbsC
berkeley_reactor_200306_biofilm_scaffold_154241_10
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9911..11434)
DNA (1524bp) protein (508aa)
rbsA3; ribose import ATP-binding protein RbsA (EC:3.6.3.17)
Putative sugar transporter subunit: ATP-binding component of ABC superfamily n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI22_9RHIZ
Putative sugar transporter subunit: ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CCV16000.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
berkeley_reactor_200306_biofilm_scaffold_154241_11
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11659..13785)
DNA (2127bp) protein (709aa)
Putative NADH oxidase {ECO:0000313|EMBL:CCV15999.1}; EC=1.-.-.- {ECO:0000313|EMBL:CCV15999.1};; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
Putative NADH oxidase n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FMC8_9RHIZ
2,4-dienoyl-CoA reductase
berkeley_reactor_200306_biofilm_scaffold_154241_12
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13867..14943)
DNA (1077bp) protein (359aa)
Oxidoreductase domain protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FIN5_9RHIZ
Oxidoreductase domain protein {ECO:0000313|EMBL:CCV15998.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
oxidoreductase
berkeley_reactor_200306_biofilm_scaffold_154241_13
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15254..16090
DNA (837bp) protein (279aa)
Xylose isomerase domain protein TIM barrel n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5FI37_9RHIZ
Xylose isomerase domain protein TIM barrel {ECO:0000313|EMBL:CCV15996.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
xylose isomerase domain-containing protein
berkeley_reactor_200306_biofilm_scaffold_154241_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16108..16530
DNA (423bp) protein (141aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00036A2377
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
berkeley_reactor_200306_biofilm_scaffold_154241_15
bacterium YEK0313, Bacteria

Not on your lists

comp(16587..17123)
DNA (537bp) protein (179aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
inorganic pyrophosphatase (EC:3.6.1.1)
inorganic pyrophosphatase n=1 Tax=Afipia birgiae RepID=UPI0002D80424
berkeley_reactor_200306_biofilm_scaffold_154241_16
bacterium YEK0313, Bacteria

Not on your lists

comp(17248..17817)
DNA (570bp) protein (190aa)
GCN5-related N-acetyltransferase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) IPR1_AZOC5">RepID=A8IPR1_AZOC5
Mycothiol acetyltransferase {ECO:0000313|EMBL:CEJ10983.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
N-acetyltransferase GCN5
berkeley_reactor_200306_biofilm_scaffold_154241_17
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17880..18926
DNA (1047bp) protein (349aa)
Ferrochelatase {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607}; EC=4.99.1.1 {ECO:0000256|HAMAP-Rule:MF_00323, ECO:0000256|RuleBase:RU000607};; Heme synthase {ECO:0000256|HAMAP-Rule:MF_00323}; Protoheme ferro-lyase {ECO:0000256|HAMAP-Rule:MF_00323}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00037DEF8F
ferrochelatase
berkeley_reactor_200306_biofilm_scaffold_154241_18
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19261..20310)
DNA (1050bp) protein (350aa)
L-threonine aldolase {ECO:0000256|PIRNR:PIRNR038940}; EC=4.1.2.48 {ECO:0000256|PIRNR:PIRNR038940};; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
Beta-eliminating lyase superfamily n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IWI4_POLGS
beta-eliminating lyase superfamily protein
berkeley_reactor_200306_biofilm_scaffold_154241_19
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20468..21193
DNA (726bp) protein (242aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PDI8_RHIML
short-chain dehydrogenase/reductase SDR
Oxidoreductase, short-chain dehydrogenase/reductase family {ECO:0000313|EMBL:AEH79959.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
berkeley_reactor_200306_biofilm_scaffold_154241_20
unknown

Not on your lists

21236..21637
DNA (402bp) protein (134aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_154241_21
GWB2_Geobacteraceae_52_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21675..23504)
DNA (1830bp) protein (610aa)
hypothetical protein n=1 Tax=Ancylobacter sp. FA202 RepID=UPI000362E5D1
sigma-54-dependent transcriptional regulator HTH Fis-type family
Tax=GWB2_Geobacteraceae_52_12_curated
berkeley_reactor_200306_biofilm_scaffold_154241_22
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23736..24788
DNA (1053bp) protein (351aa)
Alcohol dehydrogenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DND4_BRAJP
molecular chaperone GroES
Alcohol dehydrogenase {ECO:0000313|EMBL:AHY51513.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
berkeley_reactor_200306_biofilm_scaffold_154241_23
unknown

Not on your lists

comp(25039..25176)
DNA (138bp) protein (46aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_154241_24
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25513..27183
DNA (1671bp) protein (557aa)
Monooxygenase n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DND3_BRAJP
Monooxygenase {ECO:0000313|EMBL:BAL11423.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
monooxygenase
berkeley_reactor_200306_biofilm_scaffold_154241_25
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27272..28309
DNA (1038bp) protein (346aa)
CDP-6-deoxy-delta-3,4-glucoseen reductase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000371783A
oxidoreductase
Blr3678 protein {ECO:0000313|EMBL:BAC48943.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
berkeley_reactor_200306_biofilm_scaffold_154241_26
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28372..29442
DNA (1071bp) protein (357aa)
toluene hydroxylase n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003791098
monooxygenase
Monooxygenase {ECO:0000313|EMBL:BAL11421.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
berkeley_reactor_200306_biofilm_scaffold_154241_27
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29448..29819
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DND0_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL11420.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
berkeley_reactor_200306_biofilm_scaffold_154241_28
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29930..30952
DNA (1023bp) protein (341aa)
amidohydrolase n=1 Tax=Bradyrhizobium japonicum RepID=UPI000380CEE4
amidohydrolase
Uncharacterized protein {ECO:0000313|EMBL:BAL11419.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
berkeley_reactor_200306_biofilm_scaffold_154241_29
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30958..31755
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DNC8_BRAJP
Uncharacterized protein {ECO:0000313|EMBL:AHY51507.1}; TaxID=476282 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum SEMIA 5079.;"
hypothetical protein
Displaying items 1-30 of 56 in total

View Taxonomy