name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_23687_1
unknown
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Not on your lists |
comp(1..930)
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This feature has no annotations |
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berkeley_reactor_200306_biofilm_scaffold_23687_2
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(1335..2609)
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Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRZ0_METTR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK52762.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_3
Devosia soli, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(2687..3928)
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hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037D6F7B
Lytic transglycosylase {ECO:0000313|EMBL:KKB76911.1}; TaxID=361041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia soli.;"
lytic murein transglycosylase
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berkeley_reactor_200306_biofilm_scaffold_23687_4
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
4043..5044
|
Sugar isomerase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IPW3_AZOC5
sugar isomerase
Sugar isomerase {ECO:0000313|EMBL:BAF86704.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_5
bacterium YEK0313, Bacteria
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Not on your lists |
5054..5650
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cytochrome C biogenesis protein CcmA n=1 Tax=Afipia birgiae RepID=UPI0003025E22
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000313|EMBL:CEJ10870.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
heme exporter protein CcmA
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berkeley_reactor_200306_biofilm_scaffold_23687_6
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
5994..6662
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Heme exporter protein B n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J143_POLGS
ccmB; heme ABC transporter permease
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_7
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
6741..7490
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Heme exporter protein C n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002E778CA
Bradyrhizobium elkanii strain UASWS1015 Contig165, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51469.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
heme transporter HemC
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berkeley_reactor_200306_biofilm_scaffold_23687_8
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
7492..7683
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Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6JFX0_9RHOB
Hemagglutination activity protein {ECO:0000313|EMBL:ETR77639.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
ccmD; heme exporter protein D
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berkeley_reactor_200306_biofilm_scaffold_23687_9
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
7680..8273
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hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030584AF
protein thiol/disulfide oxidoreductase DsbE
Periplasmic protein thiol/disulfide oxidoreductase DsbE {ECO:0000313|EMBL:ADH90069.1}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_10
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
8366..9550
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Uncharacterized protein n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UP26_METS4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACA18573.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_11
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
9547..10044
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RNA pyrophosphohydrolase {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016246}; EC=3.6.1.- {ECO:0000256|HAMAP-Rule:MF_00298, ECO:0000256|SAAS:SAAS00016219};; (Di)nucleoside polyphosphate hydrolase {ECO:0000256|HAMAP-Rule:MF_00298}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
RNA pyrophosphohydrolase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YTC4_9RHIZ
NUDIX hydrolase
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berkeley_reactor_200306_biofilm_scaffold_23687_12
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
10041..10538
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RNA pyrophosphohydrolase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SD31_9BRAD
RNA pyrophosphohydrolase {ECO:0000313|EMBL:KFG68821.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
dinucleoside polyphosphate hydrolase
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berkeley_reactor_200306_biofilm_scaffold_23687_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(10576..11031)
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Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NUN2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS32846.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
GCN5-related N-acetyltransferase
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berkeley_reactor_200306_biofilm_scaffold_23687_14
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
11255..11974
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Monofunctional biosynthetic peptidoglycan transglycosylase {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055690}; Short=Monofunctional TGase {ECO:0000256|HAMAP-Rule:MF_00766};; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00766, ECO:0000256|SAAS:SAAS00055699};; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
mtgA; Monofunctional biosynthetic peptidoglycan transglycosylase (Monofunctional TGase) (EC:2.4.2.-)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI00036DF05B
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berkeley_reactor_200306_biofilm_scaffold_23687_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
12114..12299
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50S ribosomal protein L32 n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2J0B0_POLGS
rpmF; 50S ribosomal protein L32
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_16
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
12580..13140
|
F0F1 ATP synthase subunit delta (EC:3.6.3.14)
ATP synthase subunit delta n=1 Tax=Rhodovulum sp. PH10 RepID=J5PSZ7_9RHOB
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
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berkeley_reactor_200306_biofilm_scaffold_23687_17
bacterium YEK0313, Bacteria
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Not on your lists |
13140..14666
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ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
F0F1 ATP synthase subunit alpha (EC:3.6.3.14)
F0F1 ATP synthase subunit alpha n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E4DE98
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berkeley_reactor_200306_biofilm_scaffold_23687_18
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
14698..15573
|
F0F1 ATP synthase subunit gamma (EC:3.6.3.14)
F0F1 ATP synthase subunit gamma n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FFF759
ATP synthase gamma chain {ECO:0000256|HAMAP-Rule:MF_00815}; ATP synthase F1 sector gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; F-ATPase gamma subunit {ECO:0000256|HAMAP-Rule:MF_00815}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
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berkeley_reactor_200306_biofilm_scaffold_23687_19
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
15694..16098
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Organic hydroperoxide resistance protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PT04_9RHOB
Organic hydroperoxide resistance protein {ECO:0000313|EMBL:EJW13027.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
Organic hydroperoxide resistance protein ohrA
|
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berkeley_reactor_200306_biofilm_scaffold_23687_20
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
16126..17559
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atpD; F0F1 ATP synthase subunit beta (EC:3.6.3.14)
ATP synthase subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01347}; EC=3.6.3.14 {ECO:0000255|HAMAP-Rule:MF_01347};; ATP synthase F1 sector subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01347}; F-ATPase subunit beta 1 {ECO:0000255|HAMAP-Rule:MF_01347}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
F0F1 ATP synthase subunit beta n=1 Tax=Kaistia granuli RepID=UPI000371CEA4
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berkeley_reactor_200306_biofilm_scaffold_23687_21
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
17637..18041
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hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E18B17
atpC; F0F1 ATP synthase subunit epsilon
ATP synthase epsilon chain {ECO:0000255|HAMAP-Rule:MF_00530}; ATP synthase F1 sector epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; F-ATPase epsilon subunit {ECO:0000255|HAMAP-Rule:MF_00530}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_22
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
comp(18055..19983)
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Manganese transport regulator MntR n=1 Tax=alpha proteobacterium BAL199 RepID=A8U183_9PROT
Manganese transport regulator MntR {ECO:0000313|EMBL:EDP62003.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
trimethylamine methyltransferase
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berkeley_reactor_200306_biofilm_scaffold_23687_23
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
20222..20611
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Uncharacterized protein n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W720_METEP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABY31682.1}; Flags: Precursor;; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
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berkeley_reactor_200306_biofilm_scaffold_23687_24
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
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Not on your lists |
20774..22045
|
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin) {ECO:0000256|HAMAP-Rule:MF_00159}; EC=1.17.7.1 {ECO:0000256|SAAS:SAAS00088795};; EC=1.17.7.3 {ECO:0000256|HAMAP-Rule:MF_00159};; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00159}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J5PTI5_9RHOB
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
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