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berkeley_reactor_200306_biofilm_scaffold_11784

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_11784_1
unknown

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comp(1..99)
DNA (99bp) protein (33aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_11784_2
bacterium YEK0313, Bacteria

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504..1049
DNA (546bp) protein (182aa)
Chemotaxis protein CheYIII n=1 Tax=Rhodovulum sp. PH10 RepID=J6LLU1_9RHOB
Chemotaxis protein CheY {ECO:0000313|EMBL:CEJ12686.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
response regulator receiver, CheY-like protein
berkeley_reactor_200306_biofilm_scaffold_11784_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1049..1573
DNA (525bp) protein (175aa)
Hpt domain protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6UJ73_9RHOB
Hpt domain protein {ECO:0000313|EMBL:EJW13619.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
CheA-like signal transduction histidine kinase
berkeley_reactor_200306_biofilm_scaffold_11784_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1665..2795
DNA (1131bp) protein (377aa)
acetylornithine deacetylase ArgE (EC:3.5.1.16)
Acetylornithine deacetylase {ECO:0000256|SAAS:SAAS00063950}; EC=3.-.-.- {ECO:0000256|SAAS:SAAS00279026};; EC=3.5.1.- {ECO:0000256|SAAS:SAAS00279018};; EC=3.5.1.16 {ECO:0000256|SAAS:SAAS00063953};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
Acetylornithine deacetylase (ArgE) n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A3W8_STAND
berkeley_reactor_200306_biofilm_scaffold_11784_5
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2803..3450
DNA (648bp) protein (216aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z2Y7_9RHIZ
Flavin reductase {ECO:0000313|EMBL:KFG70440.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_11784_6
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3463..3975)
DNA (513bp) protein (171aa)
HpcH/HpaI aldolase n=1 Tax=Methylobacterium extorquens (strain PA1) RepID=A9W550_METEP
HpcH/HpaI aldolase
HpcH/HpaI aldolase {ECO:0000313|EMBL:ABY30706.1}; TaxID=419610 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain PA1).;"
berkeley_reactor_200306_biofilm_scaffold_11784_7
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4064..5104
DNA (1041bp) protein (347aa)
hypothetical protein n=1 Tax=Methylopila sp. M107 RepID=UPI000372B910
lytic transglycosylase
Lytic transglycosylase catalytic {ECO:0000313|EMBL:ADU43603.1}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
berkeley_reactor_200306_biofilm_scaffold_11784_8
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5108..6262
DNA (1155bp) protein (385aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMS0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62477.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
berkeley_reactor_200306_biofilm_scaffold_11784_9
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6391..6813
DNA (423bp) protein (141aa)
Large-conductance mechanosensitive channel n=4 Tax=Methylobacterium extorquens RepID=MSCL_METC4
Large-conductance mechanosensitive channel {ECO:0000256|HAMAP-Rule:MF_00115, ECO:0000256|SAAS:SAAS00023935}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
large conductance mechanosensitive channel protein
berkeley_reactor_200306_biofilm_scaffold_11784_10
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7007..8212
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00035FDE9B
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ADH87424.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_11784_11
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8331..8963
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J9DEB4_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW09631.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
two-component response regulator
berkeley_reactor_200306_biofilm_scaffold_11784_12
bacterium YEK0313, Bacteria

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comp(8985..10220)
DNA (1236bp) protein (412aa)
5-aminolevulinate synthase (EC:2.3.1.37)
5-aminolevulinate synthase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A017_STAND
5-aminolevulinate synthase {ECO:0000313|EMBL:CEJ16160.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
berkeley_reactor_200306_biofilm_scaffold_11784_13
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10631..11503
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000375D688
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADH87622.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
berkeley_reactor_200306_biofilm_scaffold_11784_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11524..12600)
DNA (1077bp) protein (359aa)
Putative 2-ketoarginine decarboxylase AruI {ECO:0000313|EMBL:EYR81937.1}; EC=4.1.1.75 {ECO:0000313|EMBL:EYR81937.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative 2-ketoarginine decarboxylase AruI n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C836_9RHIZ
decarboxylase
Displaying 14 items

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