name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
berkeley_reactor_200306_biofilm_scaffold_132711_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1..339)
|
UPI0003CFE05B related cluster n=1 Tax=unknown RepID=UPI0003CFE05B
ABC transporter permease {ECO:0000313|EMBL:ESZ19239.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
inner-membrane translocator
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(339..1226)
|
Inner-membrane translocator n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBR7_METNO
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACL59321.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1563..2762)
|
ABC transporter permease n=1 Tax=Methyloferula stellata RepID=UPI000362BB91
ABC transporter permease {ECO:0000313|EMBL:KFG67279.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
extracellular ligand-binding receptor
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_4
bacterium YEK0313, Bacteria
|
Not on your lists |
comp(2791..3534)
|
histidinol dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F12605
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ15313.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_5
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3527..4285)
|
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000381A720
ABC transporter-like protein {ECO:0000313|EMBL:EMS43565.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
ABC transporter-like protein
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_6
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4428..5747)
|
Chloride channel core n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPK9_METS4
chloride channel core protein
Chloride channel core {ECO:0000313|EMBL:ACA20435.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5867..6451)
|
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HNG7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99113.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
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berkeley_reactor_200306_biofilm_scaffold_132711_8
unknown
|
Not on your lists |
comp(6448..6630)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_9
unknown
|
Not on your lists |
comp(6654..7022)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_10
unknown
|
Not on your lists |
comp(7022..7162)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
7311..8003
|
Putative phage repressor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKQ1_NITHX
phage repressor
Putative phage repressor {ECO:0000313|EMBL:ABE63196.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_12
unknown
|
Not on your lists |
comp(8046..8309)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_13
unknown
|
Not on your lists |
8483..8830
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8920..10329
|
UDP-glucose 6-dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FC2B15
UDP-glucose 6-dehydrogenase
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:BAF88258.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_15
unknown
|
Not on your lists |
comp(10377..10601)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_16
unknown
|
Not on your lists |
comp(10780..10881)
|
This feature has no annotations |
|
berkeley_reactor_200306_biofilm_scaffold_132711_trna_2
unknown
|
Not on your lists |
comp(11149..11222)
|
transferRNA Pro
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_trna_1
unknown
|
Not on your lists |
11373..11444
|
transferRNA Gln
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(11759..12562)
|
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI0002F98572
Putative short-chain dehydrogenase/reductase SDR family protein {ECO:0000313|EMBL:CDX13821.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative short-chain dehydrogenase/reductase SDR family protein
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12814..13758
|
Sugar ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FIL5_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:CDX51209.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter substrate-binding protein
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_19
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13793..15331
|
Arabinose import ATP-binding protein AraG 2 {ECO:0000313|EMBL:CDX36337.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX36337.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter n=1 Tax=Treponema primitia RepID=UPI000255571F
ABC transporter
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_20
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15328..16347
|
ABC transporter permease n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000376DFB3
Inner-membrane translocator {ECO:0000313|EMBL:CDX36340.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
inner-membrane translocator
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16498..17370)
|
Beta-lactamase domain protein {ECO:0000313|EMBL:CDX13839.1}; EC=3.5.2.6 {ECO:0000313|EMBL:CDX13839.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Metallo-beta-lactamase domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RK51_9PROT
hypothetical protein
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17605..18771)
|
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=3 Tax=Acidiphilium RepID=A5FZN6_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:CDX36192.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
extracellular ligand-binding receptor
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
19333..20232
|
Inner-membrane translocator n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPQ4_ROSCS
Putative High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CDX36349.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
inner-membrane translocator
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
20229..22085
|
ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) putative branched-chain amino acid transport protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AWU9_AZOBR
Putative ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) branched-chain amino acid transport protein {ECO:0000313|EMBL:CDX13832.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
branched-chain amino acid ABC transporter permease
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22082..22810
|
Branched-chain amino acid transport ATP-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I227_SULAT
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CDX51216.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
livF; branched chain amino acid ABC transporter ATPase
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_26
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
22998..23462
|
Uncharacterized protein {ECO:0000313|EMBL:CDX36327.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
23487..24365
|
UPI0003CE36AB related cluster n=1 Tax=unknown RepID=UPI0003CE36AB
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:CDX51206.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative beta-lactamase domain protein
|
|
berkeley_reactor_200306_biofilm_scaffold_132711_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
24486..25370
|
Putative beta-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CDX36168.1}; EC=1.1.1.- {ECO:0000313|EMBL:CDX36168.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037DB820
oxidoreductase
|