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berkeley_reactor_200306_biofilm_scaffold_132711

Search features with annotation key words

Displaying items 1-30 of 64 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_biofilm_scaffold_132711_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..339)
DNA (339bp) protein (113aa)
UPI0003CFE05B related cluster n=1 Tax=unknown RepID=UPI0003CFE05B
ABC transporter permease {ECO:0000313|EMBL:ESZ19239.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_132711_2
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(339..1226)
DNA (888bp) protein (296aa)
Inner-membrane translocator n=1 Tax=Methylobacterium nodulans (strain ORS2060 / LMG 21967) RepID=B8IBR7_METNO
inner-membrane translocator
Inner-membrane translocator {ECO:0000313|EMBL:ACL59321.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
berkeley_reactor_200306_biofilm_scaffold_132711_3
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1563..2762)
DNA (1200bp) protein (400aa)
ABC transporter permease n=1 Tax=Methyloferula stellata RepID=UPI000362BB91
ABC transporter permease {ECO:0000313|EMBL:KFG67279.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
extracellular ligand-binding receptor
berkeley_reactor_200306_biofilm_scaffold_132711_4
bacterium YEK0313, Bacteria

Not on your lists

comp(2791..3534)
DNA (744bp) protein (248aa)
histidinol dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F12605
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CEJ15313.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_132711_5
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3527..4285)
DNA (759bp) protein (253aa)
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000381A720
ABC transporter-like protein {ECO:0000313|EMBL:EMS43565.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
ABC transporter-like protein
berkeley_reactor_200306_biofilm_scaffold_132711_6
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4428..5747)
DNA (1320bp) protein (440aa)
Chloride channel core n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UPK9_METS4
chloride channel core protein
Chloride channel core {ECO:0000313|EMBL:ACA20435.1}; Flags: Precursor;; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
berkeley_reactor_200306_biofilm_scaffold_132711_7
Sphingobium baderi, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5867..6451)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Sphingobium baderi LL03 RepID=T0HNG7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQA99113.1}; TaxID=1114964 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium baderi LL03.;"
berkeley_reactor_200306_biofilm_scaffold_132711_8
unknown

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comp(6448..6630)
DNA (183bp) protein (61aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_9
unknown

Not on your lists

comp(6654..7022)
DNA (369bp) protein (123aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_10
unknown

Not on your lists

comp(7022..7162)
DNA (141bp) protein (47aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_11
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7311..8003
DNA (693bp) protein (231aa)
Putative phage repressor n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QKQ1_NITHX
phage repressor
Putative phage repressor {ECO:0000313|EMBL:ABE63196.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
berkeley_reactor_200306_biofilm_scaffold_132711_12
unknown

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comp(8046..8309)
DNA (264bp) protein (88aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_13
unknown

Not on your lists

8483..8830
DNA (348bp) protein (116aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8920..10329
DNA (1410bp) protein (470aa)
UDP-glucose 6-dehydrogenase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002FC2B15
UDP-glucose 6-dehydrogenase
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:BAF88258.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
berkeley_reactor_200306_biofilm_scaffold_132711_15
unknown

Not on your lists

comp(10377..10601)
DNA (225bp) protein (75aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_16
unknown

Not on your lists

comp(10780..10881)
DNA (102bp) protein (34aa)

This feature has no annotations

berkeley_reactor_200306_biofilm_scaffold_132711_trna_2
unknown

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comp(11149..11222)
DNA (74bp)
transferRNA Pro
berkeley_reactor_200306_biofilm_scaffold_132711_trna_1
unknown

Not on your lists

11373..11444
DNA (72bp)
transferRNA Gln
berkeley_reactor_200306_biofilm_scaffold_132711_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11759..12562)
DNA (804bp) protein (268aa)
hypothetical protein n=1 Tax=Mastigocladopsis repens RepID=UPI0002F98572
Putative short-chain dehydrogenase/reductase SDR family protein {ECO:0000313|EMBL:CDX13821.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative short-chain dehydrogenase/reductase SDR family protein
berkeley_reactor_200306_biofilm_scaffold_132711_18
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12814..13758
DNA (945bp) protein (315aa)
Sugar ABC transporter substrate-binding protein n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FIL5_9RHIZ
ABC-type sugar transport system periplasmic component {ECO:0000313|EMBL:CDX51209.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
sugar ABC transporter substrate-binding protein
berkeley_reactor_200306_biofilm_scaffold_132711_19
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13793..15331
DNA (1539bp) protein (513aa)
Arabinose import ATP-binding protein AraG 2 {ECO:0000313|EMBL:CDX36337.1}; EC=3.6.3.17 {ECO:0000313|EMBL:CDX36337.1};; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
ABC transporter n=1 Tax=Treponema primitia RepID=UPI000255571F
ABC transporter
berkeley_reactor_200306_biofilm_scaffold_132711_20
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15328..16347
DNA (1020bp) protein (340aa)
ABC transporter permease n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI000376DFB3
Inner-membrane translocator {ECO:0000313|EMBL:CDX36340.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_132711_21
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16498..17370)
DNA (873bp) protein (291aa)
Beta-lactamase domain protein {ECO:0000313|EMBL:CDX13839.1}; EC=3.5.2.6 {ECO:0000313|EMBL:CDX13839.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Metallo-beta-lactamase domain protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RK51_9PROT
hypothetical protein
berkeley_reactor_200306_biofilm_scaffold_132711_22
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17605..18771)
DNA (1167bp) protein (389aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=3 Tax=Acidiphilium RepID=A5FZN6_ACICJ
Uncharacterized protein {ECO:0000313|EMBL:CDX36192.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
extracellular ligand-binding receptor
berkeley_reactor_200306_biofilm_scaffold_132711_23
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19333..20232
DNA (900bp) protein (300aa)
Inner-membrane translocator n=1 Tax=Roseiflexus castenholzii (strain DSM 13941 / HLO8) RepID=A7NPQ4_ROSCS
Putative High-affinity branched-chain amino acid transport system permease protein LivH {ECO:0000313|EMBL:CDX36349.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
inner-membrane translocator
berkeley_reactor_200306_biofilm_scaffold_132711_24
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20229..22085
DNA (1857bp) protein (619aa)
ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) putative branched-chain amino acid transport protein n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AWU9_AZOBR
Putative ABC tranpsorter, permease protein (N-ter) and ATP-binding protein (C-ter) branched-chain amino acid transport protein {ECO:0000313|EMBL:CDX13832.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
branched-chain amino acid ABC transporter permease
berkeley_reactor_200306_biofilm_scaffold_132711_25
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22082..22810
DNA (729bp) protein (243aa)
Branched-chain amino acid transport ATP-binding protein n=2 Tax=Sulfobacillus acidophilus RepID=F8I227_SULAT
High-affinity branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:CDX51216.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
livF; branched chain amino acid ABC transporter ATPase
berkeley_reactor_200306_biofilm_scaffold_132711_26
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22998..23462
DNA (465bp) protein (155aa)
Uncharacterized protein {ECO:0000313|EMBL:CDX36327.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
berkeley_reactor_200306_biofilm_scaffold_132711_27
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23487..24365
DNA (879bp) protein (293aa)
UPI0003CE36AB related cluster n=1 Tax=unknown RepID=UPI0003CE36AB
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:CDX51206.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
putative beta-lactamase domain protein
berkeley_reactor_200306_biofilm_scaffold_132711_28
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24486..25370
DNA (885bp) protein (295aa)
Putative beta-hydroxyacid dehydrogenase {ECO:0000313|EMBL:CDX36168.1}; EC=1.1.1.- {ECO:0000313|EMBL:CDX36168.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037DB820
oxidoreductase
Displaying items 1-30 of 64 in total

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