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scnpilot_p_inoc_scaffold_1355

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1355_1
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..113
DNA (111bp) protein (37aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu (Fragment) n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EIA2_9RHOB
Elongation factor Tu {ECO:0000313|EMBL:ESW59984.1}; Flags: Fragment;; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rh
scnpilot_p_inoc_scaffold_1355_2
Paracoccus sp. 10990, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

273..701
DNA (429bp) protein (143aa)
Histidine triad (HIT) protein n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B5H6_PARDP
HIT family hydrolase {ECO:0000313|EMBL:KGJ17196.1}; TaxID=1525716 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 10990.
histidine triad (HIT) protein
scnpilot_p_inoc_scaffold_1355_3
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

715..1110
DNA (396bp) protein (132aa)
lguL; Lactoylglutathione lyase (EC:4.4.1.5)
Lactoylglutathione lyase n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NPI7_9RHOB
Lactoylglutathione lyase {ECO:0000313|EMBL:EAV45350.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata
scnpilot_p_inoc_scaffold_1355_4
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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1200..2411
DNA (1212bp) protein (404aa)
cobalamin synthesis protein, P47K id=2693971 bin=GWF1_Rhodobacteraceae_65_7 species=Paracoccus sp. TRP genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
Transposase IS116/IS110/IS902 family protein Tax=GWF1_Rhodobacteraceae_65_7_curated
Putative metal chaperone, involved in Zn homeostasis, GTPase of family
scnpilot_p_inoc_scaffold_1355_5
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2462..2704
DNA (243bp) protein (81aa)
hypothetical protein PaTRP_06784 id=2693967 bin=GWF1_Rhodobacteraceae_65_7 species=Paracoccus sp. TRP genus=Paracoccus taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1355_6
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2780..3421
DNA (642bp) protein (214aa)
Acetyltransferase id=3043640 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
acetyltransferase Tax=GWF1_Rhodobacteraceae_65_7_curated
Putative acetyltransferase
scnpilot_p_inoc_scaffold_1355_7
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3602..4360)
DNA (759bp) protein (253aa)
Transcriptional regulator, AraC family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LU94_RUEPO
Transcriptional regulator, AraC family {ECO:0000313|EMBL:AKH99310.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea
transcriptional regulator, AraC family
scnpilot_p_inoc_scaffold_1355_8
Hoeflea phototrophica, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4431..4967
DNA (537bp) protein (179aa)
Redoxin n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D2C8_9RHIZ
Peroxiredoxin {ECO:0000313|EMBL:EDQ34179.1}; TaxID=411684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea phototrophica DFL-43.;"
Peroxiredoxin
scnpilot_p_inoc_scaffold_1355_9
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5058..5258
DNA (201bp) protein (67aa)
Preprotein translocase, SecE subunit id=3043637 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
secE; preprotein translocase subunit SecE; K03073 preprotein translocase subunit SecE Tax=GWF1_Rhodobacteraceae_65_7_curated
secE; preprotein translocase subunit SecE
scnpilot_p_inoc_scaffold_1355_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5455..5988
DNA (534bp) protein (178aa)
Transcription antitermination protein nusG id=3043634 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
NusG antitermination factor; K02601 transcriptional antiterminator NusG Tax=GWF1_Rhodobacteraceae_65_7_curated
NusG antitermination factor
scnpilot_p_inoc_scaffold_1355_11
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6078..6530
DNA (453bp) protein (151aa)
50S ribosomal protein L11 n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EEP4_9RHOB
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter
rplK; 50S ribosomal protein L11
scnpilot_p_inoc_scaffold_1355_12
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


6535..7233
DNA (699bp) protein (233aa)
50S ribosomal protein L1 id=3043627 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
rplA; 50S ribosomal protein L1; K02863 large subunit ribosomal protein L1 Tax=GWF1_Rhodobacteraceae_65_7_curated
rplA; 50S ribosomal protein L1
scnpilot_p_inoc_scaffold_1355_13
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7464..7979
DNA (516bp) protein (172aa)
50S ribosomal protein L10 id=3043622 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
rplJ; 50S ribosomal protein L10 Tax=GWF1_Rhodobacteraceae_65_7_curated
rplJ; LSU ribosomal protein L10P
scnpilot_p_inoc_scaffold_1355_14
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8048..8425
DNA (378bp) protein (126aa)
50S ribosomal protein L7/L12 n=5 Tax=Rhodobacter RepID=RL7_RHOS4
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000255|HAMAP-Rule:MF_00368}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobact
scnpilot_p_inoc_scaffold_1355_15
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8675..12814
DNA (4140bp) protein (1380aa)
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) rbh
DNA-directed RNA polymerase subunit beta id=3043554 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter capsulatus genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_1355_16
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12861..17102
DNA (4242bp) protein (1414aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' id=3043552 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
scnpilot_p_inoc_scaffold_1355_17
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17218..18024
DNA (807bp) protein (269aa)
Putative uncharacterized protein id=3043550 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
hypothetical protein
scnpilot_p_inoc_scaffold_1355_18
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18088..18960
DNA (873bp) protein (291aa)
hypothetical protein Tax=GWF1_Rhodobacteraceae_65_7_curated
Putative uncharacterized protein id=3043548 bin=GWF1_Rhodobacteraceae_65_7 species=Rhodobacter sp. SW2 genus=Rhodobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
hypothetical protein
scnpilot_p_inoc_scaffold_1355_19
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19230..19601
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EDJ2_9RHOB
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rho
rpsL; 30S ribosomal protein S12
scnpilot_p_inoc_scaffold_1355_20
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19613..20083
DNA (471bp) protein (157aa)
30S ribosomal protein S7 id=3043540 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good + rbh
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7 Tax=GWF1_Rhodobacteraceae_65_7_curated
30S ribosomal protein S7
scnpilot_p_inoc_scaffold_1355_21
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20096..22213
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=EFG_RHOSK rbh
elongation factor G rbh
Elongation factor G {ECO:0000255|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000255|HAMAP-Rule:MF_00054};; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobactera
scnpilot_p_inoc_scaffold_1355_22
Roseobacter sp. GAI101, Roseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22302..22412
DNA (111bp) protein (37aa)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3S858_9RHOB
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=391589 species="Bacteria; Proteobacteria; Alphaproteobacter
Displaying 22 items

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