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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 51-100 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_641
Order: Myxococcales (50%)
48 54071 bp 69.02 6.50 88.07
scnpilot_p_inoc_scaffold_618
Class: Deltaproteobacteria (51.06%)
47 55579 bp 68.01 7.65 89.48
scnpilot_p_inoc_scaffold_744
Class: Deltaproteobacteria (53.19%)
47 44922 bp 68.08 7.03 85.89
scnpilot_p_inoc_scaffold_913
Order: Myxococcales (58.7%)
46 60157 bp 67.58 7.00 90.46
scnpilot_p_inoc_scaffold_733
Order: Myxococcales (56.52%)
46 45735 bp 70.00 5.94 90.21
scnpilot_p_inoc_scaffold_589
Order: Myxococcales (60%)
45 58538 bp 69.25 7.07 91.80
scnpilot_p_inoc_scaffold_711
Order: Myxococcales (57.78%)
45 47991 bp 68.50 7.56 88.40
scnpilot_p_inoc_scaffold_597
Order: Myxococcales (56.82%)
44 57596 bp 69.04 7.70 88.54
scnpilot_p_inoc_scaffold_714
Order: Myxococcales (52.27%)
44 58229 bp 68.48 7.26 87.85
scnpilot_p_inoc_scaffold_636
Order: Myxococcales (62.79%)
43 54343 bp 68.72 6.45 90.17
scnpilot_p_inoc_scaffold_1044
Order: Myxococcales (60.47%)
43 44502 bp 68.88 6.97 89.53
scnpilot_p_inoc_scaffold_688
Order: Myxococcales (53.49%)
43 49423 bp 68.55 6.52 90.61
scnpilot_p_inoc_scaffold_754
Order: Myxococcales (51.16%)
43 45276 bp 68.85 6.70 85.85
scnpilot_p_inoc_scaffold_848
Order: Myxococcales (50%)
42 56197 bp 67.67 6.62 85.10
scnpilot_p_inoc_scaffold_632
Phylum: Proteobacteria (52.38%)
42 54835 bp 68.78 6.76 92.08
scnpilot_p_inoc_scaffold_910
Order: Myxococcales (52.38%)
42 47279 bp 69.34 5.96 91.37
scnpilot_p_inoc_scaffold_710
Order: Myxococcales (52.38%)
42 48081 bp 68.30 7.43 90.92
scnpilot_p_inoc_scaffold_762
Phylum: Proteobacteria (50%)
42 44013 bp 69.62 6.64 89.23
scnpilot_p_inoc_scaffold_777
Domain: Bacteria (73.17%)
41 43870 bp 67.86 7.23 89.08
scnpilot_p_inoc_scaffold_633
Order: Myxococcales (65.85%)
41 54830 bp 68.91 6.38 89.79
scnpilot_p_inoc_scaffold_1052
Class: Deltaproteobacteria (56.1%)
41 50984 bp 67.36 6.86 89.18
scnpilot_p_inoc_scaffold_689
Class: Deltaproteobacteria (56.1%)
41 49345 bp 69.16 6.46 89.65
scnpilot_p_inoc_scaffold_1145
Order: Myxococcales (64.1%)
39 44115 bp 69.07 6.57 87.49
scnpilot_p_inoc_scaffold_1436
Order: Myxococcales (56.41%)
39 39123 bp 68.78 6.42 85.55
scnpilot_p_inoc_scaffold_679
Order: Myxococcales (64.1%)
39 49961 bp 68.31 7.27 90.24
scnpilot_p_inoc_scaffold_765
Order: Myxococcales (51.28%)
39 43792 bp 66.88 7.52 85.42
scnpilot_p_inoc_scaffold_787
Order: Myxococcales (55.26%)
38 42529 bp 68.05 6.23 83.79
scnpilot_p_inoc_scaffold_795
Order: Myxococcales (65.79%)
38 41908 bp 68.76 6.42 86.75
scnpilot_p_inoc_scaffold_811
Order: Myxococcales (50%)
38 40360 bp 68.27 6.98 90.71
scnpilot_p_inoc_scaffold_1251
Order: Myxococcales (55.26%)
38 47735 bp 68.20 6.61 88.36
scnpilot_p_inoc_scaffold_755
Order: Myxococcales (52.63%)
38 44146 bp 69.25 6.19 89.89
scnpilot_p_inoc_scaffold_747
Order: Myxococcales (59.46%)
37 44727 bp 69.11 6.35 90.15
scnpilot_p_inoc_scaffold_766
Order: Myxococcales (62.16%)
37 45691 bp 68.33 7.45 90.33
scnpilot_p_inoc_scaffold_1712
Order: Myxococcales (63.89%)
36 43022 bp 67.83 7.38 93.82
scnpilot_p_inoc_scaffold_1001
Order: Myxococcales (69.44%)
36 39774 bp 65.68 6.57 86.64
scnpilot_p_inoc_scaffold_946
Order: Myxococcales (52.78%)
36 38448 bp 68.33 6.55 85.98
scnpilot_p_inoc_scaffold_723
Order: Myxococcales (58.33%)
36 46435 bp 67.90 6.04 81.73
scnpilot_p_inoc_scaffold_1129
Phylum: Proteobacteria (58.33%)
36 38015 bp 65.18 7.42 77.47
scnpilot_p_inoc_scaffold_796
Order: Myxococcales (54.29%)
35 41714 bp 68.89 6.89 87.55
scnpilot_p_inoc_scaffold_807
Phylum: Proteobacteria (54.29%)
35 42792 bp 67.46 7.46 89.55
scnpilot_p_inoc_scaffold_781
Order: Myxococcales (50%)
34 42793 bp 68.13 6.58 89.31
scnpilot_p_inoc_scaffold_1031
Phylum: Proteobacteria (52.94%)
34 45916 bp 68.63 7.63 88.57
scnpilot_p_inoc_scaffold_935
Order: Myxococcales (64.71%)
34 48071 bp 69.34 6.87 89.18
scnpilot_p_inoc_scaffold_721
Order: Myxococcales (58.82%)
34 47094 bp 68.65 6.71 89.99
scnpilot_p_inoc_scaffold_780
Phylum: Proteobacteria (54.55%)
33 42796 bp 68.46 7.08 87.98
scnpilot_p_inoc_scaffold_804
Phylum: Proteobacteria (51.52%)
33 41109 bp 68.64 6.83 85.29
scnpilot_p_inoc_scaffold_892
Phylum: Proteobacteria (63.64%)
33 36051 bp 67.52 7.01 88.77
scnpilot_p_inoc_scaffold_925
Order: Myxococcales (72.73%)
33 35444 bp 69.33 6.47 91.17
scnpilot_p_inoc_scaffold_1579
Order: Myxococcales (66.67%)
33 35710 bp 68.39 6.83 87.07
scnpilot_p_inoc_scaffold_812
Order: Myxococcales (56.25%)
32 40318 bp 67.62 7.44 93.18
Displaying items 51-100 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.