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SCNpilot_P_inoc_Myxococcales_68_7

In projects: SCNpilot_P_inoc

Consensus taxonomy: Myxococcales  →  Deltaproteobacteria  →  Proteobacteria  →  Bacteria

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 6.83 Longest contig: 295.41 Kbp Bin length: 11.84 Mbp GC content: 68.37 %
Contigs count: 421 Features count: 10148 rRNAs count: 0 tRNAs count: 0

Genome completeness

near complete RP 53 / 55 MC: 4 BSCG 51 / 51 MC: 7 ASCG 14 / 38 MC: 1
Displaying items 51-100 of 421 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1838
Domain: Bacteria (69.23%)
13 16246 bp 67.10 7.03 98.76
scnpilot_p_inoc_scaffold_4262
Domain: Bacteria (62.5%)
8 8451 bp 67.12 6.67 92.47
scnpilot_p_inoc_scaffold_1957
Order: Myxococcales (83.33%)
12 15398 bp 67.19 7.53 86.64
scnpilot_p_inoc_scaffold_8426
Order: Myxococcales (83.33%)
6 5287 bp 67.20 7.12 86.42
scnpilot_p_inoc_scaffold_1106
Order: Myxococcales (52%)
25 27806 bp 67.21 6.16 92.90
scnpilot_p_inoc_scaffold_1360
Domain: Bacteria (73.68%)
19 22301 bp 67.23 6.65 86.92
scnpilot_p_inoc_scaffold_1592
Domain: Bacteria (55%)
20 18601 bp 67.24 6.52 77.72
scnpilot_p_inoc_scaffold_7009
Species: Sorangium cellulosum (57.14%)
7 6018 bp 67.25 6.48 90.58
scnpilot_p_inoc_scaffold_1490
Domain: Bacteria (61.9%)
21 19940 bp 67.26 6.87 85.85
scnpilot_p_inoc_scaffold_1280
Phylum: Proteobacteria (52.17%)
23 23616 bp 67.31 7.32 76.31
scnpilot_p_inoc_scaffold_23385
Order: Myxococcales (66.67%)
3 2505 bp 67.31 6.65 85.39
scnpilot_p_inoc_scaffold_533
Phylum: Proteobacteria (60.32%)
63 67108 bp 67.32 7.47 89.68
scnpilot_p_inoc_scaffold_4042 25 12024 bp 67.32 7.82 44.09
scnpilot_p_inoc_scaffold_830
Order: Myxococcales (75%)
32 39561 bp 67.33 6.40 89.19
scnpilot_p_inoc_scaffold_3125
Order: Myxococcales (55.56%)
9 10446 bp 67.35 6.82 88.17
scnpilot_p_inoc_scaffold_2145
Domain: Bacteria (52.94%)
17 14150 bp 67.36 6.71 70.13
scnpilot_p_inoc_scaffold_1052
Class: Deltaproteobacteria (56.1%)
41 50984 bp 67.36 6.86 89.18
scnpilot_p_inoc_scaffold_2715
Order: Myxococcales (64.29%)
14 11701 bp 67.38 6.58 90.79
scnpilot_p_inoc_scaffold_1527
Order: Myxococcales (69.23%)
13 19530 bp 67.41 6.87 91.32
scnpilot_p_inoc_scaffold_2333
Order: Myxococcales (50%)
10 13260 bp 67.43 6.81 84.91
scnpilot_p_inoc_scaffold_7728
Species: Sorangium cellulosum (50%)
6 5642 bp 67.44 6.38 84.33
scnpilot_p_inoc_scaffold_1756
Class: Deltaproteobacteria (52.94%)
17 16997 bp 67.45 6.69 91.13
scnpilot_p_inoc_scaffold_979
Order: Myxococcales (52%)
25 32517 bp 67.45 7.05 88.09
scnpilot_p_inoc_scaffold_807
Phylum: Proteobacteria (54.29%)
35 42792 bp 67.46 7.46 89.55
scnpilot_p_inoc_scaffold_1214
Phylum: Proteobacteria (56.52%)
23 24919 bp 67.47 6.50 86.84
scnpilot_p_inoc_scaffold_1471
Order: Myxococcales (68.18%)
22 20285 bp 67.47 7.34 84.65
scnpilot_p_inoc_scaffold_484
Phylum: Proteobacteria (53.03%)
66 76759 bp 67.47 7.59 89.11
scnpilot_p_inoc_scaffold_2425
Order: Myxococcales (50%)
12 20534 bp 67.49 6.28 87.54
scnpilot_p_inoc_scaffold_31116
Species: RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated (66.67%)
3 2003 bp 67.50 4.72 100.20
scnpilot_p_inoc_scaffold_1478
Order: Myxococcales (56.52%)
23 20751 bp 67.50 6.85 82.65
scnpilot_p_inoc_scaffold_1525
Order: Myxococcales (68%)
25 27981 bp 67.50 6.65 91.74
scnpilot_p_inoc_scaffold_1354
Order: Myxococcales (50%)
22 22423 bp 67.51 7.45 95.26
scnpilot_p_inoc_scaffold_892
Phylum: Proteobacteria (63.64%)
33 36051 bp 67.52 7.01 88.77
scnpilot_p_inoc_scaffold_4076
Phylum: Proteobacteria (57.14%)
7 8690 bp 67.55 7.08 79.57
scnpilot_p_inoc_scaffold_10359
Phylum: Proteobacteria (66.67%)
6 4589 bp 67.57 5.36 87.21
scnpilot_p_inoc_scaffold_400
Class: Deltaproteobacteria (51.43%)
70 87368 bp 67.58 7.37 91.41
scnpilot_p_inoc_scaffold_913
Order: Myxococcales (58.7%)
46 60157 bp 67.58 7.00 90.46
scnpilot_p_inoc_scaffold_1181
Order: Myxococcales (50%)
32 42346 bp 67.60 6.46 85.69
scnpilot_p_inoc_scaffold_7389
Order: Myxococcales (60%)
5 5812 bp 67.60 6.14 85.63
scnpilot_p_inoc_scaffold_1834
Order: Myxococcales (53.85%)
13 16280 bp 67.61 6.05 90.09
scnpilot_p_inoc_scaffold_812
Order: Myxococcales (56.25%)
32 40318 bp 67.62 7.44 93.18
scnpilot_p_inoc_scaffold_1812
Order: Myxococcales (78.57%)
14 16485 bp 67.64 6.35 86.41
scnpilot_p_inoc_scaffold_5270
Order: Myxococcales (60%)
5 7332 bp 67.65 6.57 93.45
scnpilot_p_inoc_scaffold_4869
Phylum: Proteobacteria (63.64%)
11 7729 bp 67.65 7.34 79.42
scnpilot_p_inoc_scaffold_848
Order: Myxococcales (50%)
42 56197 bp 67.67 6.62 85.10
scnpilot_p_inoc_scaffold_8811
Species: Enhygromyxa salina (50%)
4 5132 bp 67.67 6.25 94.23
scnpilot_p_inoc_scaffold_2768
Order: Myxococcales (50%)
14 17248 bp 67.69 6.73 87.75
scnpilot_p_inoc_scaffold_5543
Domain: Bacteria (66.67%)
6 7090 bp 67.74 6.60 74.09
scnpilot_p_inoc_scaffold_560
Order: Myxococcales (60.56%)
71 86261 bp 67.76 7.27 89.37
scnpilot_p_inoc_scaffold_14299
Order: Myxococcales (50%)
6 3626 bp 67.76 6.99 67.43
Displaying items 51-100 of 421 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.