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scnpilot_p_inoc_scaffold_2287

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2287_1
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1317)
DNA (1317bp) protein (439aa)
preprotein translocase subunit SecD n=1 Tax=Citromicrobium bathyomarinum RepID=UPI0001DD06FE
Protein translocase subunit SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source
preprotein translocase subunit SecD
scnpilot_p_inoc_scaffold_2287_2
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1332..1652)
DNA (321bp) protein (107aa)
Preprotein translocase, YajC subunit n=1 Tax=Erythrobacter sp. NAP1 RepID=A3W9F6_9SPHN
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_2287_3
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2024..2875)
DNA (852bp) protein (284aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
5-carboxymethyl-2-hydroxymuconate isomerase n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CB5F2 rbh
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:KKC26726.1}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" sou
scnpilot_p_inoc_scaffold_2287_4
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3075..3488
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) RepID=Q1GSE1_SPHAL
hypothetical protein
Tax=BJP_IG2102_Porphyrobacter_62_18
scnpilot_p_inoc_scaffold_2287_5
Sphingobium sp. SYK-6, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3740..4186
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QVT8_METTR
hypothetical protein
Putative uncharacterized protein {ECO:0000313|EMBL:BAK66697.1}; TaxID=627192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingo
scnpilot_p_inoc_scaffold_2287_6
Novosphingobium subterraneum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4271..4708
DNA (438bp) protein (146aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169,
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000315F54F
scnpilot_p_inoc_scaffold_2287_7
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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4818..5303
DNA (486bp) protein (162aa)
hypothetical protein n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI0002E8E093
Acetyl-CoA carboxylase {ECO:0000313|EMBL:KEO88405.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source="Erythrobacter
acetyl-CoA carboxylase
scnpilot_p_inoc_scaffold_2287_8
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5319..6668
DNA (1350bp) protein (450aa)
Biotin carboxylase {ECO:0000313|EMBL:AKH41935.1}; EC=6.3.4.14 {ECO:0000313|EMBL:AKH41935.1};; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae
biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha (EC:6.3.4.14)
Acetyl-CoA carboxylase carboxyltransferase subunit alpha n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G6K5_NOVAD
scnpilot_p_inoc_scaffold_2287_9
Sphingobium sp. AP49, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6788..9082
DNA (2295bp) protein (765aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Sphingobium sp. AP49 RepID=J2D4E7_9SPHN rbh
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJK84544.1}; TaxID=1144307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomon
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_p_inoc_scaffold_2287_10
Erythrobacter sp. JL475, Erythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9098..9562)
DNA (465bp) protein (155aa)
AsnC family transcriptional regulator n=1 Tax=Novosphingobium nitrogenifigens RepID=UPI0002E595B9
ArsR family transcriptional regulator {ECO:0000313|EMBL:KEO88401.1}; TaxID=383381 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Erythrobacter.;" source=
transcriptional regulator
scnpilot_p_inoc_scaffold_2287_11
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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9779..11614
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2YHZ1_9SPHN rbh
Uncharacterized protein {ECO:0000313|EMBL:GAD47627.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingo
histidine kinase rbh
scnpilot_p_inoc_scaffold_2287_12
Altererythrobacter atlanticus, Altererythrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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11659..12654
DNA (996bp) protein (332aa)
Uncharacterized protein n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=Q2G8N0_NOVAD rbh
Uncharacterized protein {ECO:0000313|EMBL:AKH41939.1}; TaxID=1267766 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Erythrobacteraceae; Altererythrobacter.;" source="Alterer
hypothetical protein
scnpilot_p_inoc_scaffold_2287_13
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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13024..13365
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Caulobacter sp. AP07 RepID=J2H0M9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:EJL28808.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. A
hypothetical protein
scnpilot_p_inoc_scaffold_2287_14
unknown

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comp(13349..13414)
DNA (66bp) protein (22aa)

This feature has no annotations

Displaying 14 items

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