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scnpilot_p_inoc_scaffold_32_curated

Search features with annotation key words

Displaying items 241-270 of 354 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_32_curated_241
Chryseobacterium formosense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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comp(269833..270615)
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Mycobacterium hassiacum DSM 44199 RepID=K5BFA3_9MYCO
Uncharacterized protein {ECO:0000313|EMBL:KFE99128.1}; TaxID=236814 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium formosense.;"
cell wall anchor domain-containing protein
scnpilot_p_inoc_scaffold_32_curated_242
Flavobacterium reichenbachii, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(270923..272092)
DNA (1170bp) protein (390aa)
Alcohol dehydrogenase GroES domain protein n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EFW7_RUNSL
Dehydrogenase {ECO:0000313|EMBL:KFF06451.1}; TaxID=362418 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium reichenbachii.;"
alcohol dehydrogenase GroES domain-containing protein
scnpilot_p_inoc_scaffold_32_curated_243
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(272120..272914)
DNA (795bp) protein (265aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VWM5_DYAFD
Putative oxidoreductase {ECO:0000313|EMBL:GAO43085.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
short-chain dehydrogenase/reductase SDR; K07124
scnpilot_p_inoc_scaffold_32_curated_244
Geobacter bemidjiensis, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(272959..273519)
DNA (561bp) protein (187aa)
Outer membrane protein, putative n=1 Tax=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) RepID=B5EEU3_GEOBB
outer membrane protein; K08995 putative membrane protein
Outer membrane protein, putative {ECO:0000313|EMBL:ACH37839.1}; TaxID=404380 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter.;" source="Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622).;"
scnpilot_p_inoc_scaffold_32_curated_245
unknown

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comp(273834..273998)
DNA (165bp) protein (55aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_32_curated_246
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

274718..275791
DNA (1074bp) protein (358aa)
Linoleoyl-CoA desaturase; K00508 linoleoyl-CoA desaturase [EC:1.14.19.3]
Linoleoyl-CoA desaturase {ECO:0000313|EMBL:AEW01851.1}; EC=1.14.19.3 {ECO:0000313|EMBL:AEW01851.1};; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Linoleoyl-CoA desaturase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJV3_NIAKG
scnpilot_p_inoc_scaffold_32_curated_247
Imtechella halotolerans, Imtechella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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275979..276254
DNA (276bp) protein (92aa)
RNP-1 like RNA-binding protein n=1 Tax=Imtechella halotolerans K1 RepID=I0W5M8_9FLAO
RNP-1 like RNA-binding protein {ECO:0000313|EMBL:EID71694.1}; TaxID=946077 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Imtechella.;" source="Imtechella halotolerans K1.;"
putative RNA-binding protein RbpA
scnpilot_p_inoc_scaffold_32_curated_248
unknown

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276292..276522
DNA (231bp) protein (77aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_32_curated_249
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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276573..277715
DNA (1143bp) protein (381aa)
Superfamily II DNA and RNA helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13]
DEAD/DEAH box helicase n=1 Tax=Riemerella columbina RepID=UPI00035DF797
Dead/deah box helicase domain protein {ECO:0000313|EMBL:AFD55635.1}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 /; NCTC 11014).;"
scnpilot_p_inoc_scaffold_32_curated_250
Pseudopedobacter saltans, Pseudopedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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277733..278164
DNA (432bp) protein (144aa)
Cold-shock DNA-binding protein family n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0SE90_PEDSD
cold-shock DNA-binding protein family
Cold-shock DNA-binding protein family {ECO:0000313|EMBL:ADY54012.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;"
scnpilot_p_inoc_scaffold_32_curated_251
Riemerella anatipestifer, Riemerella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

278198..278389
DNA (192bp) protein (64aa)
ColD-shock DNA-binding protein family n=5 Tax=Riemerella anatipestifer RepID=E4T9D7_RIEAD
colD-shock DNA-binding protein family; K03704 cold shock protein (beta-ribbon, CspA family)
ColD-shock DNA-binding protein family {ECO:0000313|EMBL:AFD55633.1}; TaxID=693978 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Riemerella.;" source="Riemerella anatipestifer (strain ATCC 11845 / DSM 15868 / JCM 9532 /; NCTC 11014).;"
scnpilot_p_inoc_scaffold_32_curated_252
Cytophaga hutchinsonii, Cytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(279279..280001)
DNA (723bp) protein (241aa)
fatty-acid desaturase (EC:1.14.19.1); K00507 stearoyl-CoA desaturase (delta-9 desaturase) [EC:1.14.19.1]
Fatty-acid desaturase {ECO:0000313|EMBL:ABG58954.1}; EC=1.14.19.1 {ECO:0000313|EMBL:ABG58954.1};; TaxID=269798 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Cytophaga.;" source="Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469).;"
Fatty-acid desaturase n=1 Tax=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) RepID=Q11UG0_CYTH3
scnpilot_p_inoc_scaffold_32_curated_253
unknown

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comp(280881..281018)
DNA (138bp) protein (46aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_32_curated_254
unknown

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comp(281126..281233)
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_32_curated_255
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(281233..283860)
DNA (2628bp) protein (876aa)
pyruvate phosphate dikinase pep/pyruvate-binding protein; K01007 pyruvate, water dikinase [EC:2.7.9.2]
Pyruvate phosphate dikinase PEP/pyruvate-binding n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y1E4_9SPHI
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_32_curated_256
unknown

Not on your lists

comp(283857..284237)
DNA (381bp) protein (127aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_32_curated_257
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(284234..285199)
DNA (966bp) protein (322aa)
ubia prenyltransferase; K03179 4-hydroxybenzoate octaprenyltransferase [EC:2.5.1.-]
UbiA prenyltransferase n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TQ70_MARTH
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_32_curated_258
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(285294..285923)
DNA (630bp) protein (210aa)
Phosphatidate cytidylyltransferase {ECO:0000313|EMBL:EFK59942.1}; EC=2.7.7.41 {ECO:0000313|EMBL:EFK59942.1};; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
putative phosphatidate cytidylyltransferase (EC:2.7.7.-)
Phosphatidate cytidylyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VIP0_9SPHI
scnpilot_p_inoc_scaffold_32_curated_259
Sphingobacterium spiritivorum, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(285923..286504)
DNA (582bp) protein (194aa)
putative CDP-alcohol phosphatidyltransferase (EC:2.7.8.-); K00995 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [EC:2.7.8.5]
CDP-alcohol phosphatidyltransferase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VIP1_9SPHI
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EFK59943.1}; TaxID=525373 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium spiritivorum ATCC 33861.;"
scnpilot_p_inoc_scaffold_32_curated_260
R_Fluviicola_43_260, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(286543..287823)
DNA (1281bp) protein (427aa)
3-hydroxy-3-methylglutaryl-coenzyme a reductase (EC:1.1.1.34); K00021 hydroxymethylglutaryl-CoA reductase (NADPH) [EC:1.1.1.34]
Hydroxymethylglutaryl-coenzyme A reductase n=1 Tax=Sphingobacterium spiritivorum ATCC 33861 RepID=D7VIP2_9SPHI
Tax=RIFCSPHIGHO2_02_FULL_Fluviicola_43_260_curated
scnpilot_p_inoc_scaffold_32_curated_261
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

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comp(288086..288538)
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Flavobacterium sp. WG21 RepID=UPI0003451488
Uncharacterized protein {ECO:0000313|EMBL:KIF30461.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
hypothetical protein
scnpilot_p_inoc_scaffold_32_curated_262
unknown

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comp(288587..289066)
DNA (480bp) protein (160aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_32_curated_263
candidate division TM7 genomosp. GTL1, Candidatus Saccharibacteria, Bacteria

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comp(289319..290896)
DNA (1578bp) protein (526aa)
ATP synthase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; EC=3.6.3.14 {ECO:0000256|HAMAP-Rule:MF_01346};; ATP synthase F1 sector subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; F-ATPase subunit alpha {ECO:0000256|HAMAP-Rule:MF_01346}; TaxID=443342 species="Bacteria; Candidatus Saccharibacteria.;" source="candidate division TM7 genomosp. GTL1.;"
ATP synthase F1 subcomplex subunit alpha; K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14]
F0F1 ATP synthase subunit alpha n=1 Tax=Niabella aurantiaca RepID=UPI000372582C
scnpilot_p_inoc_scaffold_32_curated_264
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(290947..291507)
DNA (561bp) protein (187aa)
ATP synthase F1 subcomplex subunit delta; K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14]
ATP synthase subunit delta n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP09_NIAKG
ATP synthase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; ATP synthase F(1) sector subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; F-type ATPase subunit delta {ECO:0000256|HAMAP-Rule:MF_01416}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_32_curated_265
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(291590..292090)
DNA (501bp) protein (167aa)
ATP synthase F0 subcomplex subunit B; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14]
ATP synthase subunit b n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TP08_NIAKG
ATP synthase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATP synthase F(0) sector subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; ATPase subunit I {ECO:0000256|HAMAP-Rule:MF_01398}; F-type ATPase subunit b {ECO:0000256|HAMAP-Rule:MF_01398}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_p_inoc_scaffold_32_curated_266
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(292211..292468)
DNA (258bp) protein (86aa)
ATP synthase F0 subunit C; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14]
ATP synthase subunit c n=1 Tax=Niabella soli DSM 19437 RepID=H1NR99_9SPHI
ATP synthase subunit c {ECO:0000256|SAAS:SAAS00242778}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_p_inoc_scaffold_32_curated_267
Flavihumibacter petaseus, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(292522..293565)
DNA (1044bp) protein (348aa)
ATP synthase F0 subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14]
ATP synthase subunit a n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP30_CHIPD
ATP synthase subunit a {ECO:0000256|HAMAP-Rule:MF_01393, ECO:0000256|RuleBase:RU000483}; ATP synthase F0 sector subunit a {ECO:0000256|HAMAP-Rule:MF_01393}; F-ATPase subunit 6 {ECO:0000256|HAMAP-Rule:MF_01393}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;"
scnpilot_p_inoc_scaffold_32_curated_268
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(293889..294659)
DNA (771bp) protein (257aa)
30S ribosomal protein S2 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK39_CHIPD
30S ribosomal protein S2; K02967 small subunit ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_32_curated_269
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(294833..295222)
DNA (390bp) protein (130aa)
30S ribosomal protein S9 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK38_CHIPD
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|RuleBase:RU003816}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_32_curated_270
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists


comp(295260..295709)
DNA (450bp) protein (150aa)
50S ribosomal protein L13 n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK37_CHIPD
50S ribosomal protein L13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366, ECO:0000256|RuleBase:RU003878}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 241-270 of 354 in total

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