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SCNpilot_BF_INOC_scaffold_539

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_539_1
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..127
DNA (126bp) protein (42aa)
Elongation factor Tu n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZJ6_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostrid
translation elongation factor 1A (EF-1A/EF-Tu)
SCNpilot_BF_INOC_scaffold_539_2
Peptoniphilus duerdenii, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


413..724
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=2 Tax=Peptoniphilus RepID=E0NJ38_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=862517 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus duerdenii A
ribosomal protein S10
SCNpilot_BF_INOC_scaffold_539_3
Clostridium ultunense, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


778..1461
DNA (684bp) protein (228aa)
50S ribosomal protein L3 n=1 Tax=Clostridium ultunense Esp RepID=M1Z7B9_9CLOT
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1288971 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source
rplC; 50S ribosomal subunit protein L3
SCNpilot_BF_INOC_scaffold_539_4
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


1486..2112
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0B2W4_CLOA9
rplD; 50S ribosomal protein L4
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / DS
SCNpilot_BF_INOC_scaffold_539_5
Eubacterium sp. CAG:581, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2112..2402
DNA (291bp) protein (97aa)
50S ribosomal protein L23 n=1 Tax=Eubacterium sp. CAG:581 RepID=R7NGK2_9FIRM
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1262890 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environ
rplW; 50S ribosomal protein L23
SCNpilot_BF_INOC_scaffold_539_6
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


2432..3262
DNA (831bp) protein (277aa)
50S ribosomal protein L2 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1AV19_9CLOT
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azore
rplB; 50S ribosomal protein L2
SCNpilot_BF_INOC_scaffold_539_7
Clostridium baratii, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3292..3564
DNA (273bp) protein (91aa)
30S ribosomal protein S19 n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VTA2_CLOSH
rpsS; ribosomal protein S19
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1415775 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium baratii str. Sul
SCNpilot_BF_INOC_scaffold_539_8
Caldisalinibacter kiritimatiensis, Caldisalinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3595..3930
DNA (336bp) protein (112aa)
50S ribosomal protein L22 n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CFE2_9CLOT
50S ribosomal protein L22 {ECO:0000256|HAMAP-Rule:MF_01331, ECO:0000256|RuleBase:RU004008}; TaxID=1304284 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caldisalinibacter.;"
50S ribosomal protein L22
SCNpilot_BF_INOC_scaffold_539_9
Alkaliphilus oremlandii, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


3947..4708
DNA (762bp) protein (254aa)
30S ribosomal protein S3 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RS3_ALKOO
30S ribosomal protein S3
30S ribosomal protein S3 {ECO:0000255|HAMAP-Rule:MF_01309}; TaxID=350688 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus oremlandii (stra
SCNpilot_BF_INOC_scaffold_539_10
Intestinibacter bartlettii, Intestinibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

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4738..5169
DNA (432bp) protein (144aa)
50S ribosomal protein L16 n=2 Tax=Clostridiales RepID=R5X4G8_9CLOT
50S ribosomal protein L16 {ECO:0000256|HAMAP-Rule:MF_01342, ECO:0000256|RuleBase:RU004414}; TaxID=1403940 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Intestinibact
rplP; 50S ribosomal subunit protein L16
SCNpilot_BF_INOC_scaffold_539_11
Gottschalkia acidurici, Gottschalkia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5172..5366
DNA (195bp) protein (65aa)
50S ribosomal protein L29 n=1 Tax=Clostridium acidurici (strain ATCC 7906 / DSM 604 / KCTC 5404 / 9a) RepID=K0AZN1_CLOA9
rpmC; 50S ribosomal protein L29
50S ribosomal protein L29 {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1128398 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Gottschalkia.;" source="Clostridium acidurici (strain ATCC 7906 / D
SCNpilot_BF_INOC_scaffold_539_12
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5384..5638
DNA (255bp) protein (85aa)
30S ribosomal protein S17 n=196 Tax=Clostridium difficile RepID=RS17_CLOD6
rpsQ; 30S ribosomal protein S17
30S ribosomal protein S17 {ECO:0000256|HAMAP-Rule:MF_01345, ECO:0000256|RuleBase:RU003873}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" sourc
SCNpilot_BF_INOC_scaffold_539_13
Clostridium sp. CAG:632, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


5662..6030
DNA (369bp) protein (123aa)
50S ribosomal protein L14 n=1 Tax=Clostridium sp. CAG:632 RepID=R5KDY9_9CLOT
rplN; ribosomal protein L14
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367, ECO:0000256|RuleBase:RU003950}; TaxID=1262830 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environ
SCNpilot_BF_INOC_scaffold_539_14
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6048..6359
DNA (312bp) protein (104aa)
50S ribosomal protein L24 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RL24_ALKOO
rplX; 50S ribosomal protein L24
50S ribosomal protein L24 {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum
SCNpilot_BF_INOC_scaffold_539_15
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


6386..6925
DNA (540bp) protein (180aa)
50S ribosomal protein L5 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQM3_9FIRM
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rplE; 50S ribosomal protein L5
SCNpilot_BF_INOC_scaffold_539_16
unknown

Not on your lists

7030..7158
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_539_17
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7149..7547
DNA (399bp) protein (133aa)
30S ribosomal protein S8 n=1 Tax=Alkaliphilus oremlandii (strain OhILAs) RepID=RS8_ALKOO
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
rpsH; 30S ribosomal protein S8
SCNpilot_BF_INOC_scaffold_539_18
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


7573..8118
DNA (546bp) protein (182aa)
50S ribosomal protein L6 n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PTU9_CLOSD
rplF; 50S ribosomal subunit protein L6
50S ribosomal protein L6 {ECO:0000256|HAMAP-Rule:MF_01365, ECO:0000256|RuleBase:RU003870}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridiu
SCNpilot_BF_INOC_scaffold_539_19
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8136..8504
DNA (369bp) protein (123aa)
50S ribosomal protein L18 n=1 Tax=Peptostreptococcus stomatis DSM 17678 RepID=E0E5C0_9FIRM
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaerobacter.;" source="Caloranaerobacter azor
rplR; 50S ribosomal protein L18
SCNpilot_BF_INOC_scaffold_539_20
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


8521..9027
DNA (507bp) protein (169aa)
30S ribosomal protein S5 n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0D8_9FIRM
30S ribosomal protein S5 {ECO:0000256|HAMAP-Rule:MF_01307, ECO:0000256|SAAS:SAAS00085406}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridiu
rpsE; 30S ribosomal protein S5
SCNpilot_BF_INOC_scaffold_539_21
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9040..9216
DNA (177bp) protein (59aa)
50S ribosomal protein L30 n=1 Tax=Peptoniphilus rhinitidis RepID=UPI000288C76E
50S ribosomal protein L30
50S ribosomal protein L30 {ECO:0000255|HAMAP-Rule:MF_01371}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alkaliphilus metalliredigens
SCNpilot_BF_INOC_scaffold_539_22
Caldalkalibacillus thermarum, Caldalkalibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists


9241..9681
DNA (441bp) protein (147aa)
50S ribosomal protein L15 n=1 Tax=Caldalkalibacillus thermarum TA2.A1 RepID=F5L9K9_9BACI
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341, ECO:0000256|RuleBase:RU003889}; TaxID=986075 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Caldalkalibacillus.;" source="
rplO; 50S ribosomal protein L15
SCNpilot_BF_INOC_scaffold_539_23
Caloranaerobacter azorensis, Caloranaerobacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


9751..10947
DNA (1197bp) protein (399aa)
Protein translocase subunit SecY n=1 Tax=Clostridiaceae bacterium L21-TH-D2 RepID=R1CFF2_9CLOT
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; TaxID=1156417 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloranaeroba
secY; preprotein translocase membrane subunit
SCNpilot_BF_INOC_scaffold_539_24
[Clostridium] sordellii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10958..11602
DNA (645bp) protein (215aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
adk; adenylate kinase (EC:2.7.4.3)
Adenylate kinase n=2 Tax=Clostridium sordellii RepID=T0ECF2_CLOSO
SCNpilot_BF_INOC_scaffold_539_25
Thermosediminibacter oceani, Thermosediminibacter, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

11606..12367
DNA (762bp) protein (254aa)
methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
Methionine aminopeptidase n=1 Tax=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) RepID=D9RZN3_THEOJ
SCNpilot_BF_INOC_scaffold_539_26
Eubacterium acidaminophilum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12367..12657
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Acetobacterium woodii (strain ATCC 29683 / DSM 1030 / JCM 2381 / KCTC 1655) RepID=H6LGS8_ACEWD
LSU ribosomal protein L14E
LSU ribosomal protein L14E {ECO:0000313|EMBL:AHM55513.1}; TaxID=1286171 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium acidaminophilum DSM
SCNpilot_BF_INOC_scaffold_539_27
GWB2_Clostridiales_37_7_curated, Clostridiales, Bacteria

Not on your lists

12663..12884
DNA (222bp) protein (74aa)
translation initiation factor IF-1
Translation initiation factor IF-1 id=2177861 bin=GWB2_Clostridiales_37_7 species=unknown genus=Clostridium taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
infA; translation initiation factor IF-1; K02518 translation initiation factor IF-1 Tax=GWB2_Clostridiales_37_7_curated
SCNpilot_BF_INOC_scaffold_539_28
[Clostridium] hiranonis, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13121..13492
DNA (372bp) protein (124aa)
30S ribosomal protein S13 n=1 Tax=Clostridium hiranonis DSM 13275 RepID=B6G0E5_9FIRM
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=500633 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="[Clostridium] hir
30S ribosomal protein S13
SCNpilot_BF_INOC_scaffold_539_29
Clostridium aceticum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13514..13912
DNA (399bp) protein (133aa)
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=84022 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium aceticum.;"
SSU ribosomal protein S11p (S14e) id=2177857 bin=GWB2_Clostridiales_37_7 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWB2_Clostridiales_37_7 organism_group=Firmicute organism_desc=Good +
30S ribosomal protein S11
SCNpilot_BF_INOC_scaffold_539_30
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


13940..14560
DNA (621bp) protein (207aa)
30S ribosomal protein S4 n=1 Tax=Caloramator australicus RC3 RepID=I7KTW9_9CLOT
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=857293 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Caloramator.;" source="Caloramator australicus RC3.;"
rpsD; 30S ribosomal protein S4
Displaying items 1-30 of 53 in total

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