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SCNpilot_BF_INOC_scaffold_715

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_BF_INOC_scaffold_715_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

Not on your lists

comp(3..260)
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TGB3_NIAKG
hypothetical protein Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
hypothetical protein
SCNpilot_BF_INOC_scaffold_715_2
Clostridium leptum CAG:27, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(281..919)
DNA (639bp) protein (213aa)
DnaJ domain protein n=1 Tax=Clostridium leptum CAG:27 RepID=R6MV08_9CLOT
DnaJ domain protein {ECO:0000313|EMBL:CDC03588.1}; TaxID=1263068 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium lep
heat shock protein DnaJ domain-containing protein
SCNpilot_BF_INOC_scaffold_715_3
Clostridium sp. ATCC 29733, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1029..1907)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2DQJ7_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:ERI99120.1}; TaxID=1507 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. (strain ATCC 29733 /
hypothetical protein
SCNpilot_BF_INOC_scaffold_715_4
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1990..4509)
DNA (2520bp) protein (840aa)
UvrABC system protein A n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX67_9CLOT
UvrABC system protein A {ECO:0000256|HAMAP-Rule:MF_00205, ECO:0000256|SAAS:SAAS00088996}; Short=UvrA protein {ECO:0000256|HAMAP-Rule:MF_00205};; Excinuclease ABC subunit A {ECO:0000256|HAMAP-Rule:MF_0
uvrA; UvrABC system protein A
SCNpilot_BF_INOC_scaffold_715_5
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4835..6649)
DNA (1815bp) protein (605aa)
UvrABC system protein B n=1 Tax=Clostridium leptum DSM 753 RepID=A7VX68_9CLOT
UvrABC system protein B {ECO:0000256|HAMAP-Rule:MF_00204, ECO:0000256|RuleBase:RU003587}; Short=Protein UvrB {ECO:0000256|HAMAP-Rule:MF_00204};; Excinuclease ABC subunit B {ECO:0000256|HAMAP-Rule:MF_0
uvrB; UvrABC system protein B
SCNpilot_BF_INOC_scaffold_715_6
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6756..7421)
DNA (666bp) protein (222aa)
RadC-like JAB domain protein n=1 Tax=Clostridium sp. MSTE9 RepID=J0WU72_9CLOT
RadC-like JAB domain protein {ECO:0000313|EMBL:EJF39921.1}; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. MSTE9.;"
DNA repair protein RadC
SCNpilot_BF_INOC_scaffold_715_7
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7459..8040)
DNA (582bp) protein (194aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00078102}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Clostridium sp. MSTE9 RepID=J0N6W0_9CLOT
SCNpilot_BF_INOC_scaffold_715_8
Ruminococcus sp. CAG:177, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8276..9223
DNA (948bp) protein (316aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1262952 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococ
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Ruminococcus sp. CAG:177 RepID=R6IWU9_9FIRM
SCNpilot_BF_INOC_scaffold_715_9
unknown

Not on your lists

9575..10027
DNA (453bp) protein (151aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_715_10
Clostridiales bacterium oral taxon 876, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10170..10913
DNA (744bp) protein (248aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Clostridiales bacterium oral taxon 876 str. F0540 RepID=U2CWL2_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=1321778 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium oral taxon 876 str. F05
sporulation transcriptional activator Spo0A
SCNpilot_BF_INOC_scaffold_715_11
Methanosarcina barkeri, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

11437..12012
DNA (576bp) protein (192aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI00038189B3
Cell surface protein {ECO:0000313|EMBL:AAZ70924.1}; TaxID=269797 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina.;" source="Methanosarcina barke
hypothetical protein
SCNpilot_BF_INOC_scaffold_715_12
unknown

Not on your lists

comp(12013..12207)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_715_13
GWF2_Clostridiales_36_10_curated, Clostridiales, Bacteria

Not on your lists

12303..13838
DNA (1536bp) protein (512aa)
FAD dependent oxidoreductase id=3837435 bin=GWF2_Clostridiales_36_10 species=Ethanoligenens harbinense genus=Ethanoligenens taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
FAD dependent oxidoreductase Tax=GWF2_Clostridiales_36_10_curated
FAD dependent oxidoreductase
SCNpilot_BF_INOC_scaffold_715_14
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13871..15388)
DNA (1518bp) protein (506aa)
Glycoside hydrolase {ECO:0000313|EMBL:KGO80079.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuen
Xylan 1,4-beta-xylosidase id=1867250 bin=GWA2_Bacteroidetes_42_15 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWA2_Bacteroidetes_42_15 organism_group=Bacteroidetes
xylan 1,4-beta-xylosidase
SCNpilot_BF_INOC_scaffold_715_15
RIFOXYB2_FULL_Elusimicrobia_48_7_curated, Elusimicrobia, Bacteria

Not on your lists

15545..17080
DNA (1536bp) protein (512aa)
esterase Tax=RIFOXYB2_FULL_Elusimicrobia_48_7_curated
Putative uncharacterized protein id=4062077 bin=GWF2_Clostridiales_36_10 species=Oscillibacter valericigenes genus=Oscillibacter taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWF2_Clostridiales_36_10 organism_group=Firmicute
mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase
SCNpilot_BF_INOC_scaffold_715_16
[Clostridium] clariflavum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17173..17805)
DNA (633bp) protein (211aa)
Putative cobalamin binding protein n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LVC6_CLOCD
putative cobalamin binding protein
Putative cobalamin binding protein {ECO:0000313|EMBL:AEV67480.1}; TaxID=720554 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium clari
SCNpilot_BF_INOC_scaffold_715_17
Alkaliphilus metalliredigens, Alkaliphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18419..19333)
DNA (915bp) protein (305aa)
Helix-turn-helix-domain containing protein, AraC type n=1 Tax=Alkaliphilus metalliredigens (strain QYMF) RepID=A6TN59_ALKMQ
helix-turn-helix domain-containing protein
Helix-turn-helix-domain containing protein, AraC type {ECO:0000313|EMBL:ABR47627.1}; TaxID=293826 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Alkaliphilus.;" source="Alka
SCNpilot_BF_INOC_scaffold_715_18
unknown

Not on your lists

comp(19398..20039)
DNA (642bp) protein (214aa)

This feature has no annotations

SCNpilot_BF_INOC_scaffold_715_19
Syntrophobotulus glycolicus, Syntrophobotulus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20152..21129)
DNA (978bp) protein (326aa)
GCN5-related N-acetyltransferase n=1 Tax=Syntrophobotulus glycolicus (strain DSM 8271 / FlGlyR) RepID=F0T2G7_SYNGF
N-acetyltransferase GCN5
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:ADY55285.1}; TaxID=645991 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Syntrophobotulus.;" source="Syntrophobotulus glyc
SCNpilot_BF_INOC_scaffold_715_20
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21646..22848)
DNA (1203bp) protein (401aa)
translation elongation factor 1A (EF-1A/EF-Tu) (EC:3.6.5.3)
Elongation factor Tu n=2 Tax=Bacteria RepID=R5A5B2_9CLOT
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostrid
SCNpilot_BF_INOC_scaffold_715_21
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22978..25056)
DNA (2079bp) protein (693aa)
elongation factor P n=1 Tax=Clostridium sporosphaeroides RepID=UPI00035C5A94
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1105031 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridiu
fusA; Elongation factor G
SCNpilot_BF_INOC_scaffold_715_22
[Clostridium] leptum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25240..25710)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=1 Tax=Firmicutes bacterium CAG:94 RepID=R6XWK4_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=428125 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] leptum DS
rpsG; 30S ribosomal protein S7
SCNpilot_BF_INOC_scaffold_715_23
Subdoligranulum sp. 4_3_54A2FAA, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(25869..26285)
DNA (417bp) protein (139aa)
30S ribosomal protein S12 n=1 Tax=Subdoligranulum sp. 4_3_54A2FAA RepID=G9RRQ3_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=665956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" s
30S ribosomal protein S12
SCNpilot_BF_INOC_scaffold_715_24
[Clostridium] cellulosi, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26503..30126)
DNA (3624bp) protein (1208aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase
DNA-directed RNA polymerase subunit beta'''' n=1 Tax=Clostridium sporosphaeroides RepID=UPI0003810D05
SCNpilot_BF_INOC_scaffold_715_25
Clostridium sp. MSTE9, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30140..32746)
DNA (2607bp) protein (869aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase su
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=Clostridium sporosphaeroides RepID=UPI000373E83F
SCNpilot_BF_INOC_scaffold_715_26
GWF2_Clostridiales_38_85_curated, Clostridiales, Bacteria

Not on your lists

comp(34233..35135)
DNA (903bp) protein (301aa)
Uncharacterized protein id=3305454 bin=GWF2_Clostridiales_38_85 species=Myroides odoratimimus genus=Myroides taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWF2_Clostridiales_38_85 organism_group=Firmicute organism_desc=a212
transmembrane anti-sigma factor Tax=GWF2_Clostridiales_38_85_curated
transmembrane anti-sigma factor
SCNpilot_BF_INOC_scaffold_715_27
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35419..35826)
DNA (408bp) protein (136aa)
Transcriptional regulator Rrf2 family n=1 Tax=Clostridium sp. CAG:242 RepID=R6CZI9_9CLOT
Transcriptional regulator Rrf2 family {ECO:0000313|EMBL:CDA77001.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" sourc
AsnC family transcriptional regulator
SCNpilot_BF_INOC_scaffold_715_28
Anaerotruncus colihominis, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35862..36935)
DNA (1074bp) protein (358aa)
RNA polymerase sigma factor SigA n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PFC0_9FIRM
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=445972 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus colih
RNA polymerase, sigma 70 subunit, RpoD
SCNpilot_BF_INOC_scaffold_715_29
Ruminococcus sp. CAG:563, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36932..38695)
DNA (1764bp) protein (588aa)
DNA primase {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811}; EC=2.7.7.- {ECO:0000256|HAMAP-Rule:MF_00974, ECO:0000256|PIRNR:PIRNR002811};; TaxID=1262961 species="Bacteria; Firmicutes;
DNA primase, catalytic core (EC:2.7.7.-)
DNA primase n=1 Tax=Ruminococcus sp. CAG:563 RepID=R6DZJ0_9FIRM
SCNpilot_BF_INOC_scaffold_715_30
Clostridium sp. CAG:1013, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38726..39724)
DNA (999bp) protein (333aa)
dgt; Putative dGTPase (EC:3.1.5.1)
HD domain protein n=1 Tax=Clostridium sp. CAG:1013 RepID=R5A852_9CLOT
HD domain protein {ECO:0000313|EMBL:CCX38039.1}; TaxID=1262769 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. C
Displaying items 1-30 of 35 in total

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