Alias: ACD2_2542.155524.63
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_13_1
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
82..1278
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tuf; elongation factor Tu (EC:3.6.5.3)
tuf; elongation factor Tu (EC:3.6.5.3)
tuf; elongation factor Tu (EC:3.6.5.3)
Elongation factor Tu n=12 Tax=Enterobacteriaceae RepID=EFTU_HAMD5 (db=UNIREF evalue=6.0e-172 bit_score=607.0 identity=73.1 coverage=96.9924812030075)
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ACD2_13_2
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
1381..1701
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rpsJ; 30S ribosomal protein S10
rpsJ_bact: ribosomal protein S10 (db=HMMTigr db_id=TIGR01049 from=7 to=105 evalue=4.8e-44 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 (db=HMMPanther db_id=PTHR11700:SF2 from=9 to=105 evalue=2.0e-40 interpro_id=IPR005731 interpro_description=Ribosomal protein S10 subgroup GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER (db=HMMPanther db_id=PTHR11700 from=9 to=105 evalue=2.0e-40 interpro_id=IPR001848 interpro_description=Ribosomal protein S10 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_13_3
unknown
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Not on your lists |
1784..1981
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50S ribosomal protein L28 n=1 Tax=Marinomonas sp. MED121 RepID=A3YCZ1_9GAMM (db=UNIREF evalue=7.0e-09 bit_score=62.8 identity=50.0 coverage=95.4545454545455)
rpmB; 50S ribosomal protein L28; K02902 large subunit ribosomal protein L28 (db=KEGG evalue=1.0e-08 bit_score=62.4 identity=48.44 coverage=95.4545454545455)
L28: ribosomal protein L28 (db=HMMTigr db_id=TIGR00009 from=1 to=58 evalue=4.1e-20 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L28 (db=HMMPfam db_id=PF00830 from=3 to=60 evalue=3.5e-19 interpro_id=IPR001383 interpro_description=Ribosomal protein L28 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_13_4
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
2414..2641
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30S ribosomal protein S16
RIBOSOMAL_S16 (db=PatternScan db_id=PS00732 from=2 to=11 evalue=0.0 interpro_id=IPR020592 interpro_description=Ribosomal protein S16, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
30S RIBOSOMAL PROTEIN S16 (db=HMMPanther db_id=PTHR12919 from=1 to=73 evalue=6.1e-19 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
S16: ribosomal protein S16 (db=HMMTigr db_id=TIGR00002 from=2 to=75 evalue=1.3e-17 interpro_id=IPR000307 interpro_description=Ribosomal protein S16 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD2_13_5
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
2665..2901
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RNA-binding protein
Prokaryotic type KH domain (KH-domain type II) (db=superfamily db_id=SSF54814 from=5 to=63 evalue=1.1e-06 interpro_id=IPR009019 interpro_description=K Homology, prokaryotic type GO=Molecular Function: RNA binding (GO:0003723))
KH_1 (db=HMMPfam db_id=PF00013 from=36 to=60 evalue=3.4e-06 interpro_id=IPR018111 interpro_description=K Homology, type 1, subgroup GO=Molecular Function: RNA binding (GO:0003723))
KH_TYPE_1 (db=ProfileScan db_id=PS50084 from=31 to=78 evalue=8.848 interpro_id=IPR004088 interpro_description=K Homology, type 1 GO=Molecular Function: RNA binding (GO:0003723))
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ACD2_13_6
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
3009..3440
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seg (db=Seg db_id=seg from=72 to=83)
transmembrane_regions (db=TMHMM db_id=tmhmm from=65 to=87)
transmembrane_regions (db=TMHMM db_id=tmhmm from=28 to=50)
transmembrane_regions 28..50 Tax=ACD2
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ACD2_13_7
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(4981..5700)
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thymidylate kinase; K00943 dTMP kinase [EC:2.7.4.9] (db=KEGG evalue=4.0e-22 bit_score=108.0 identity=36.26 coverage=68.75)
no description (db=Gene3D db_id=G3DSA:3.40.50.300 from=11 to=158 evalue=2.1e-19)
P-loop containing nucleoside triphosphate hydrolases (db=superfamily db_id=SSF52540 from=8 to=186 evalue=5.0e-14)
THYMIDYLATE KINASE (db=HMMPanther db_id=PTHR10344 from=11 to=126 evalue=3.3e-08 interpro_id=IPR018094 interpro_description=Thymidylate kinase GO=Molecular Function: thymidylate kinase activity (GO:0004798), Molecular Function: ATP binding (GO:0005524), Biological Process: dTDP biosynthetic process (GO:0006233))
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ACD2_13_8
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
5774..6127
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5774..6127 + (rbs_motif=TAAA rbs_spacer=9bp)
hypothetical protein Tax=ACD2
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ACD2_13_9
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
6130..6834
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seg (db=Seg db_id=seg from=93 to=102)
seg 93..102 Tax=ACD2
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ACD2_13_10
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
6939..9545
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DNA gyrase, A subunit n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYU8_THERP (db=UNIREF evalue=0.0 bit_score=758.0 identity=49.19 coverage=90.5638665132336)
DNA gyrase subunit A
DNA gyrase subunit A
DNA gyrase subunit A
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ACD2_13_11
unknown
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Not on your lists |
comp(9628..11157)
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Structural protein n=1 Tax=Synechococcus phage syn9 RepID=Q0QZC7_BPSYS (db=UNIREF evalue=3.0e-13 bit_score=80.5 identity=30.0 coverage=31.9607843137255)
laminin G (db=KEGG evalue=2.0e-10 bit_score=71.2 identity=24.89 coverage=79.8039215686275)
seg (db=Seg db_id=seg from=71 to=92)
Concanavalin A-like lectins/glucanases (db=superfamily db_id=SSF49899 from=298 to=490 evalue=5.3e-20 interpro_id=IPR008985 interpro_description=Concanavalin A-like lectin/glucanase)
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ACD2_13_12
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(11917..13869)
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hypothetical protein
hypothetical protein
hypothetical protein
hypothetical protein Plarl_19712 n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693706 (db=UNIREF evalue=3.0e-105 bit_score=386.0 identity=38.6 coverage=84.0245775729647)
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ACD2_13_13
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(14161..15030)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=43)
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=142 to=250 evalue=2.2e-10)
transmembrane_regions 26..43 Tax=ACD2
hypothetical protein
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ACD2_13_14
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(15038..15514)
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seg (db=Seg db_id=seg from=131 to=145)
transmembrane_regions (db=TMHMM db_id=tmhmm from=133 to=155)
transmembrane_regions (db=TMHMM db_id=tmhmm from=93 to=112)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=22)
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ACD2_13_15
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(15524..15940)
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seg (db=Seg db_id=seg from=4 to=20)
transmembrane_regions (db=TMHMM db_id=tmhmm from=112 to=134)
transmembrane_regions (db=TMHMM db_id=tmhmm from=77 to=99)
transmembrane_regions (db=TMHMM db_id=tmhmm from=5 to=27)
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ACD2_13_16
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(15944..16453)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=142 to=164)
transmembrane_regions (db=TMHMM db_id=tmhmm from=108 to=130)
transmembrane_regions (db=TMHMM db_id=tmhmm from=41 to=63)
transmembrane_regions 41..63 Tax=ACD2
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ACD2_13_17
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
17032..17409
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transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=29)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
transmembrane_regions (db=TMHMM db_id=tmhmm from=33 to=52)
transmembrane_regions (db=TMHMM db_id=tmhmm from=59 to=81)
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ACD2_13_18
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
17467..17688
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=50 to=72)
seg (db=Seg db_id=seg from=2 to=22)
transmembrane_regions (db=TMHMM db_id=tmhmm from=7 to=24)
SecG (db=HMMPfam db_id=PF03840 from=4 to=72 evalue=1.1e-09 interpro_id=IPR004692 interpro_description=Preprotein translocase SecG subunit GO=Biological Process: protein secretion (GO:0009306), Molecular Function: P-P-bond-hydrolysis-driven protein transmembrane transporter activity (GO:0015450), Cellular Component: integral to membrane (GO:0016021))
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ACD2_13_19
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
17716..19863
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extracellular solute-binding protein family 5; K02035 peptide/nickel transport system substrate-binding protein (db=KEGG evalue=3.0e-08 bit_score=64.3 identity=23.24 coverage=43.7150837988827)
coiled-coil (db=Coil db_id=coil from=474 to=495 evalue=NA)
transmembrane_regions (db=TMHMM db_id=tmhmm from=13 to=32)
seg (db=Seg db_id=seg from=2 to=20)
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ACD2_13_20
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
19865..20764
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seg (db=Seg db_id=seg from=80 to=86)
transmembrane_regions (db=TMHMM db_id=tmhmm from=248 to=270)
transmembrane_regions (db=TMHMM db_id=tmhmm from=219 to=241)
transmembrane_regions (db=TMHMM db_id=tmhmm from=164 to=186)
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ACD2_13_21
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(21097..21498)
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SUF system FeS assembly protein, NifU family
SufE/NifU (db=superfamily db_id=SSF82649 from=6 to=122 evalue=7.9e-22)
no description (db=Gene3D db_id=G3DSA:3.90.1010.10 from=6 to=132 evalue=8.8e-17)
NifU_N (db=HMMPfam db_id=PF01592 from=8 to=121 evalue=8.8e-12 interpro_id=IPR002871 interpro_description=NIF system FeS cluster assembly, NifU, N-terminal GO=Molecular Function: iron ion binding (GO:0005506), Biological Process: iron-sulfur cluster assembly (GO:0016226), Molecular Function: iron-sulfur cluster binding (GO:0051536))
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ACD2_13_22
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
21635..23857
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laminin G (db=KEGG evalue=6.0e-12 bit_score=76.6 identity=28.16 coverage=39.5411605937922)
seg (db=Seg db_id=seg from=147 to=158)
seg (db=Seg db_id=seg from=300 to=315)
transmembrane_regions (db=TMHMM db_id=tmhmm from=12 to=34)
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ACD2_13_23
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
23982..24368
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transmembrane_regions (db=TMHMM db_id=tmhmm from=69 to=91)
transmembrane_regions (db=TMHMM db_id=tmhmm from=101 to=123)
transmembrane_regions 69..91 Tax=ACD2
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ACD2_13_24
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
24375..24791
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transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=76 to=98)
transmembrane_regions (db=TMHMM db_id=tmhmm from=113 to=135)
seg (db=Seg db_id=seg from=4 to=15)
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ACD2_13_25
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
24801..25280
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transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions (db=TMHMM db_id=tmhmm from=94 to=116)
transmembrane_regions (db=TMHMM db_id=tmhmm from=136 to=158)
seg (db=Seg db_id=seg from=4 to=18)
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ACD2_13_26
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
25287..26156
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transmembrane_regions (db=TMHMM db_id=tmhmm from=26 to=43)
Metalloproteases ("zincins"), catalytic domain (db=superfamily db_id=SSF55486 from=50 to=250 evalue=1.7e-11)
Uncharacterized protein {ECO:0000313|EMBL:EKE29478.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
hypothetical protein
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ACD2_13_27
unknown
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Not on your lists |
26452..28413
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hypothetical protein
Beta-lactamase domain protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=D3E6N3_GEOS4 (db=UNIREF evalue=2.0e-105 bit_score=387.0 identity=38.64 coverage=83.6391437308868)
seg (db=Seg db_id=seg from=620 to=630)
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ACD2_13_28
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
28497..29078
|
transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
seg (db=Seg db_id=seg from=20 to=33)
Pili subunits (db=superfamily db_id=SSF54523 from=18 to=129 evalue=9.8e-19)
BCTERIALGSPG (db=FPrintScan db_id=PR00813 from=53 to=71 evalue=1.9e-08 interpro_id=IPR000983 interpro_description=Bacterial general secretion pathway protein G GO=Molecular Function: protein transporter activity (GO:0008565), Cellular Component: type II protein secretion system complex (GO:0015627), Biological Process: protein secretion by the type II secretion system (GO:0015628))
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ACD2_13_29
unknown
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Not on your lists |
comp(29515..29916)
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SUF system FeS assembly protein, NifU family
Putative NifU-like N terminal domain protein n=1 Tax=uncultured marine crenarchaeote HF4000_ANIW93H17 RepID=B3T2T4_9ARCH (db=UNIREF evalue=4.0e-09 bit_score=63.5 identity=26.77 coverage=90.2985074626866)
SufE/NifU (db=superfamily db_id=SSF82649 from=4 to=123 evalue=1.0e-20)
no description (db=Gene3D db_id=G3DSA:3.90.1010.10 from=3 to=132 evalue=7.9e-15)
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ACD2_13_30
unknown
|
Not on your lists |
29995..32214
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Structural protein n=1 Tax=Synechococcus phage syn9 RepID=Q0QZC7_BPSYS (db=UNIREF evalue=7.0e-11 bit_score=73.2 identity=25.88 coverage=22.1621621621622)
large adhesin (db=KEGG evalue=4.0e-09 bit_score=67.4 identity=24.68 coverage=56.4864864864865)
transmembrane_regions (db=TMHMM db_id=tmhmm from=21 to=43)
seg (db=Seg db_id=seg from=26 to=47)
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