Alias: ACD2_2542.155524.63
name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
ACD2_13_61
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(68709..68909)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=20 to=42)
transmembrane_regions 20..42 Tax=ACD2
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ACD2_13_62
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
68987..69232
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Endo/excinuclease amino terminal domain protein n=1 Tax=Bermanella marisrubri RepID=Q1MZE8_9GAMM (db=UNIREF evalue=8.0e-22 bit_score=105.0 identity=66.67 coverage=93.9024390243902)
excinuclease ABC subunit C domain-containing protein
GIY-YIG (db=HMMPfam db_id=PF01541 from=1 to=73 evalue=1.5e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
GIY-YIG endonuclease (db=superfamily db_id=SSF82771 from=1 to=73 evalue=1.6e-12 interpro_id=IPR000305 interpro_description=Excinuclease ABC, C subunit, N-terminal GO=Molecular Function: nuclease activity (GO:0004518), Cellular Component: intracellular (GO:0005622), Biological Process: DNA repair (GO:0006281))
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ACD2_13_63
unknown
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Not on your lists |
comp(69439..70017)
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pentapeptide repeat-containing protein
Antibiotic resistance protein McbG n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFK8_9BACT (db=UNIREF evalue=2.0e-30 bit_score=134.0 identity=36.61 coverage=94.300518134715)
Pentapeptide repeat-like (db=superfamily db_id=SSF141571 from=11 to=192 evalue=3.8e-42)
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ACD2_13_64
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(70025..70306)
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transmembrane_regions (db=TMHMM db_id=tmhmm from=66 to=85)
transmembrane_regions (db=TMHMM db_id=tmhmm from=39 to=61)
transmembrane_regions (db=TMHMM db_id=tmhmm from=4 to=26)
transmembrane_regions 4..26 Tax=ACD2
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ACD2_13_65
unknown
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Not on your lists |
comp(70412..71026)
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hypothetical protein VspiD_19695 n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745B81 (db=UNIREF evalue=3.0e-29 bit_score=131.0 identity=33.82 coverage=98.5365853658537)
haloacid dehalogenase domain protein hydrolase (db=KEGG evalue=1.0e-23 bit_score=112.0 identity=31.03 coverage=98.0487804878049)
HAD-like (db=superfamily db_id=SSF56784 from=1 to=203 evalue=2.3e-32)
no description (db=Gene3D db_id=G3DSA:3.40.50.1000 from=2 to=203 evalue=6.4e-15)
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ACD2_13_66
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(71888..72199)
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seg (db=Seg db_id=seg from=84 to=95)
seg (db=Seg db_id=seg from=31 to=44)
transmembrane_regions (db=TMHMM db_id=tmhmm from=27 to=49)
transmembrane_regions 27..49 Tax=ACD2
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ACD2_13_67
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(72217..73449)
|
sortase family protein
seg (db=Seg db_id=seg from=23 to=36)
transmembrane_regions (db=TMHMM db_id=tmhmm from=151 to=173)
seg (db=Seg db_id=seg from=66 to=75)
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ACD2_13_68
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(73580..73774)
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73580..73774 - (rbs_motif=TAAA rbs_spacer=14bp)
hypothetical protein Tax=ACD2
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ACD2_13_69
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(73846..74124)
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seg (db=Seg db_id=seg from=6 to=17)
seg 6..17 Tax=ACD2
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ACD2_13_70
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
74251..74877
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seg (db=Seg db_id=seg from=38 to=50)
transmembrane_regions (db=TMHMM db_id=tmhmm from=139 to=161)
transmembrane_regions (db=TMHMM db_id=tmhmm from=102 to=124)
transmembrane_regions (db=TMHMM db_id=tmhmm from=68 to=90)
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ACD2_13_71
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
75205..76260
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seg (db=Seg db_id=seg from=62 to=73)
SIGMA70_2 (db=PatternScan db_id=PS00716 from=39 to=65 evalue=0.0 interpro_id=IPR000943 interpro_description=RNA polymerase sigma-70 factor GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
Sigma70_r4 (db=HMMPfam db_id=PF04545 from=16 to=59 evalue=1.2e-11 interpro_id=IPR007630 interpro_description=RNA polymerase sigma-70 region 4 GO=Molecular Function: DNA binding (GO:0003677), Molecular Function: transcription factor activity (GO:0003700), Biological Process: transcription initiation (GO:0006352), Biological Process: regulation of transcription, DNA-dependent (GO:0006355), Molecular Function: sigma factor activity (GO:0016987))
no description (db=Gene3D db_id=G3DSA:1.10.10.10 from=1 to=86 evalue=8.1e-11 interpro_id=IPR011991 interpro_description=Winged helix-turn-helix transcription repressor DNA-binding)
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ACD2_13_72
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
76582..77331
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76582..77331 + (rbs_motif=TAAA rbs_spacer=8bp)
hypothetical protein Tax=ACD2
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ACD2_13_73
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
77337..77750
|
seg (db=Seg db_id=seg from=19 to=28)
seg (db=Seg db_id=seg from=102 to=115)
seg 19..28 Tax=ACD2
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ACD2_13_74
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
77927..78619
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seg (db=Seg db_id=seg from=10 to=22)
seg (db=Seg db_id=seg from=28 to=64)
seg (db=Seg db_id=seg from=69 to=83)
seg (db=Seg db_id=seg from=144 to=161)
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ACD2_13_75
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
78835..79695
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coiled-coil (db=Coil db_id=coil from=206 to=227 evalue=NA)
seg (db=Seg db_id=seg from=56 to=84)
coiled-coil 206..227 Tax=ACD2
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ACD2_13_76
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(79746..81044)
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seg (db=Seg db_id=seg from=414 to=432)
seg (db=Seg db_id=seg from=191 to=202)
seg (db=Seg db_id=seg from=168 to=184)
seg (db=Seg db_id=seg from=121 to=146)
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ACD2_13_77
uncultured bacterium (gcode 4), Bacteria
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Not on your lists |
81181..81459
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81181..81459 + (rbs_motif=TAA rbs_spacer=8bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE29427.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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ACD2_13_78
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
81499..83343
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Aspartyl-tRNA synthetase n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=SYD_PROA2 (db=UNIREF evalue=5.0e-155 bit_score=551.0 identity=44.68 coverage=94.3089430894309)
aspS; aspartyl-tRNA synthetase
aspS; aspartyl-tRNA synthetase
aspS; aspartyl-tRNA synthetase
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ACD2_13_79
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
83411..84532
|
seg (db=Seg db_id=seg from=201 to=213)
seg (db=Seg db_id=seg from=97 to=147)
transmembrane_regions (db=TMHMM db_id=tmhmm from=273 to=295)
transmembrane_regions (db=TMHMM db_id=tmhmm from=241 to=263)
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ACD2_13_80
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
85394..86104
|
seg (db=Seg db_id=seg from=33 to=43)
seg (db=Seg db_id=seg from=46 to=56)
seg 33..43 Tax=ACD2
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ACD2_13_81
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
86230..87069
|
similar to 5-nucleotidase, cytosolic III-like (db=KEGG evalue=2.0e-26 bit_score=123.0 identity=30.36 coverage=95.7142857142857)
UMPH-1 (db=HMMPfam db_id=PF05822 from=45 to=278 evalue=3.7e-42)
NT5C3 HYDROLASE (db=HMMPanther db_id=PTHR13045 from=1 to=279 evalue=1.9e-25 interpro_id=IPR006434 interpro_description=HAD-superfamily hydrolase, subfamily IE GO=Molecular Function: magnesium ion binding (GO:0000287), Cellular Component: cytoplasm (GO:0005737), Molecular Function: 5'-nucleotidase activity (GO:0008253))
HAD-like (db=superfamily db_id=SSF56784 from=26 to=230 evalue=1.8e-12)
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Pyrimidine 5-prime-nucleotidase (P5N; EC 3.1.3.5), also called uridine 5-prime monophosphate hydrolase (UMPH), catalyzes the dephosphorylation of the pyrimidine 5-prime monophosphates UMP and CMP to the corresponding nucleosides
Jill Banfield
(11/15/12)
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ACD2_13_82
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
87093..87689
|
type 11 methyltransferase
S-adenosyl-L-methionine-dependent methyltransferases (db=superfamily db_id=SSF53335 from=7 to=190 evalue=2.5e-16)
Methyltransf_11 (db=HMMPfam db_id=PF08241 from=63 to=127 evalue=1.1e-05 interpro_id=IPR013216 interpro_description=Methyltransferase type 11 GO=Biological Process: metabolic process (GO:0008152), Molecular Function: methyltransferase activity (GO:0008168))
no description (db=Gene3D db_id=G3DSA:3.40.50.150 from=31 to=127 evalue=5.2e-05)
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ACD2_13_83
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(89013..89414)
|
89013..89414 - (rbs_motif=TAAAA rbs_spacer=15bp)
hypothetical protein Tax=ACD2
|
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ACD2_13_84
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
89944..90447
|
89944..90447 + (rbs_motif=None rbs_spacer=None)
hypothetical protein Tax=ACD2
|
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ACD2_13_85
ACD2, Gracilibacteria, Bacteria
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Not on your lists |
comp(91539..92477)
|
seg (db=Seg db_id=seg from=121 to=130)
seg 121..130 Tax=ACD2
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ACD2_13_86
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
comp(92542..94089)
|
seg (db=Seg db_id=seg from=141 to=155)
CheY-like (db=superfamily db_id=SSF52172 from=393 to=477 evalue=7.3e-07 interpro_id=IPR011006 interpro_description=CheY-like)
no description (db=Gene3D db_id=G3DSA:3.40.50.2300 from=394 to=477 evalue=0.00032)
RESPONSE_REGULATORY (db=ProfileScan db_id=PS50110 from=394 to=476 evalue=12.052 interpro_id=IPR001789 interpro_description=Signal transduction response regulator, receiver domain GO=Molecular Function: two-component response regulator activity (GO:0000156), Biological Process: two-component signal transduction system (phosphorelay) (GO:0000160), Biological Process: regulation of transcription, DNA-dependent (GO:0006355))
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ACD2_13_87
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
94347..95102
|
||
ACD2_13_88
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
95105..95548
|
pyrophosphohydrolase
Nudix (db=superfamily db_id=SSF55811 from=1 to=145 evalue=1.4e-21 interpro_id=IPR015797 interpro_description=NUDIX hydrolase domain-like GO=Molecular Function: hydrolase activity (GO:0016787))
no description (db=Gene3D db_id=G3DSA:3.90.79.10 from=21 to=130 evalue=4.9e-15 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
NUDIX (db=HMMPfam db_id=PF00293 from=26 to=130 evalue=2.1e-13 interpro_id=IPR000086 interpro_description=NUDIX hydrolase domain GO=Molecular Function: hydrolase activity (GO:0016787))
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ACD2_13_89
ACD2, Gracilibacteria, Bacteria
|
Not on your lists |
95559..96452
|
D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB) (D-Ala-D-Ala ligase B) (EC:6.3.2.4)
Glutathione synthetase ATP-binding domain-like (db=superfamily db_id=SSF56059 from=92 to=293 evalue=5.6e-41)
D-ALANINE--D-ALANINE LIGASE (db=HMMPanther db_id=PTHR23132 from=41 to=296 evalue=8.9e-38)
Dala_Dala_lig_C (db=HMMPfam db_id=PF07478 from=104 to=293 evalue=1.2e-35 interpro_id=IPR011095 interpro_description=D-alanine--D-alanine ligase, C-terminal GO=Molecular Function: D-alanine-D-alanine ligase activity (GO:0008716), Biological Process: peptidoglycan biosynthetic process (GO:0009252))
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starts peptidoglycan biosyn (from alanine)
Jill Banfield
(11/15/12)
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ACD2_13_90
uncultured bacterium (gcode 4), Bacteria
|
Not on your lists |
96569..97099
|
seg (db=Seg db_id=seg from=28 to=41)
Uncharacterized protein {ECO:0000313|EMBL:EKE29414.1}; TaxID=1234023 species="Bacteria; environmental samples.;" source="uncultured bacterium (gcode 4).;"
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