Alias: ACD20_303.15031.13
name | lists | location/seqs | annotations | notes |
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ACD20_99_1
uncultured bacterium, Bacteria
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Not on your lists |
comp(503..1303)
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SLEI family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q23WR6_TETTH (db=UNIREF evalue=5.0e-23 bit_score=111.0 identity=31.67 coverage=76.7790262172285)
hypothetical protein
no description (db=Gene3D db_id=G3DSA:1.25.40.10 from=34 to=241 evalue=1.9e-42 interpro_id=IPR011990 interpro_description=Tetratricopeptide-like helical GO=Molecular Function: binding (GO:0005488))
TPR-like (db=superfamily db_id=SSF48452 from=13 to=238 evalue=1.5e-32)
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ACD20_99_2
uncultured bacterium, Bacteria
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Not on your lists |
1856..2293
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thioesterase superfamily protein
Thioesterase/thiol ester dehydrase-isomerase (db=superfamily db_id=SSF54637 from=1 to=133 evalue=7.7e-27)
no description (db=Gene3D db_id=G3DSA:3.10.129.10 from=3 to=129 evalue=1.1e-25)
TIGR00051: acyl-CoA thioester hydrolase, Yb (db=HMMTigr db_id=TIGR00051 from=8 to=122 evalue=4.9e-19 interpro_id=IPR006684 interpro_description=4-hydroxybenzoyl-CoA thioesterase GO=Molecular Function: hydrolase activity (GO:0016787))
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ACD20_99_3
uncultured bacterium, Bacteria
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Not on your lists |
2295..2735
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fur; ferric uptake regulation protein
seg (db=Seg db_id=seg from=2 to=15)
coiled-coil (db=Coil db_id=coil from=105 to=126 evalue=NA)
"Winged helix" DNA-binding domain (db=superfamily db_id=SSF46785 from=6 to=141 evalue=3.3e-35)
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ACD20_99_4
uncultured bacterium, Bacteria
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Not on your lists |
comp(2732..3529)
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putative phospholipid/glycerol acyltransferase
Glycerol-3-phosphate (1)-acyltransferase (db=superfamily db_id=SSF69593 from=26 to=236 evalue=6.6e-11)
Acyltransferase (db=HMMPfam db_id=PF01553 from=50 to=177 evalue=2.4e-05 interpro_id=IPR002123 interpro_description=Phospholipid/glycerol acyltransferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: acyltransferase activity (GO:0008415))
no description (db=HMMSmart db_id=SM00563 from=66 to=182 evalue=0.0018 interpro_id=IPR002123 interpro_description=Phospholipid/glycerol acyltransferase GO=Biological Process: metabolic process (GO:0008152), Molecular Function: acyltransferase activity (GO:0008415))
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ACD20_99_5
uncultured bacterium, Bacteria
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Not on your lists |
comp(3739..4779)
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6-hydroxycylohex-1-ene-1-carboxyl-CoA dehydrogenase n=1 Tax=uncultured bacterium RepID=Q565X2_9BACT (db=UNIREF evalue=5.0e-89 bit_score=331.0 identity=54.41 coverage=96.5417867435158)
alcohol dehydrogenase
seg (db=Seg db_id=seg from=166 to=181)
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ACD20_99_6
uncultured bacterium, Bacteria
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Not on your lists |
comp(4943..6310)
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vnfE; nitrogenase associated protein E
seg (db=Seg db_id=seg from=271 to=289)
seg (db=Seg db_id=seg from=344 to=353)
coiled-coil (db=Coil db_id=coil from=260 to=281 evalue=NA)
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putative nifK blast hit, 57.4%
weaker nifE blast hit.
kelly wrighton
(11/15/12)
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ACD20_99_7
uncultured bacterium, Bacteria
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Not on your lists |
comp(6418..7947)
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Nitrogenase vanadium-cofactor synthesis protein VnfE
seg (db=Seg db_id=seg from=310 to=325)
seg (db=Seg db_id=seg from=471 to=484)
"Helical backbone" metal receptor (db=superfamily db_id=SSF53807 from=44 to=499 evalue=5.1e-59)
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likely nifD by blasting cyanobacterial
kelly wrighton
(11/15/12)
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ACD20_99_8
uncultured bacterium, Bacteria
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Not on your lists |
comp(8022..8894)
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nitrogenase iron protein (EC:1.18.6.1)
NIFH_FRXC_1 (db=PatternScan db_id=PS00746 from=89 to=101 evalue=0.0 interpro_id=IPR000392 interpro_description=Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
Nitrogenase iron protein (db=HMMPIR db_id=PIRSF000363 from=4 to=280 evalue=5.9e-130 interpro_id=IPR000392 interpro_description=Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
Fer4_NifH (db=HMMPfam db_id=PF00142 from=6 to=276 evalue=1.3e-95 interpro_id=IPR000392 interpro_description=Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL GO=Molecular Function: ATP binding (GO:0005524), Molecular Function: oxidoreductase activity (GO:0016491), Biological Process: oxidation reduction (GO:0055114))
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nifH type XX
active residues confirmed
kelly wrighton
(11/15/12)
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ACD20_99_9
uncultured bacterium, Bacteria
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Not on your lists |
comp(9196..9591)
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rpsI; 30S ribosomal protein S9
seg (db=Seg db_id=seg from=112 to=125)
seg (db=Seg db_id=seg from=64 to=73)
RIBOSOMAL_S9 (db=PatternScan db_id=PS00360 from=70 to=88 evalue=0.0 interpro_id=IPR020574 interpro_description=Ribosomal protein S9, conserved site GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_99_10
uncultured bacterium, Bacteria
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Not on your lists |
comp(9591..10031)
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50S ribosomal protein L13
rplM_bact: ribosomal protein L13 (db=HMMTigr db_id=TIGR01066 from=3 to=142 evalue=8.2e-89 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
50S RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545:SF2 from=1 to=142 evalue=8.6e-60 interpro_id=IPR005823 interpro_description=Ribosomal protein L13, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L13 (db=HMMPanther db_id=PTHR11545 from=1 to=142 evalue=8.6e-60 interpro_id=IPR005822 interpro_description=Ribosomal protein L13 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_99_11
uncultured bacterium, Bacteria
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Not on your lists |
comp(10003..10866)
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tRNA pseudouridine synthase A (EC:5.4.99.12)
tRNA-pseudouridine synthase A, prokaryotic type (db=HMMPIR db_id=PIRSF001430 from=20 to=278 evalue=6.0e-80 interpro_id=IPR001406 interpro_description=Pseudouridine synthase I, TruA GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
Pseudouridine synthase (db=superfamily db_id=SSF55120 from=18 to=280 evalue=5.1e-73 interpro_id=IPR020103 interpro_description=Pseudouridine synthase, catalytic domain GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
hisT_truA: tRNA pseudouridine synthase A (db=HMMTigr db_id=TIGR00071 from=23 to=257 evalue=2.0e-69 interpro_id=IPR001406 interpro_description=Pseudouridine synthase I, TruA GO=Biological Process: pseudouridine synthesis (GO:0001522), Molecular Function: RNA binding (GO:0003723), Biological Process: RNA modification (GO:0009451), Molecular Function: pseudouridine synthase activity (GO:0009982))
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ACD20_99_12
uncultured bacterium, Bacteria
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Not on your lists |
comp(10883..11332)
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rplQ; 50S ribosomal protein L17
seg (db=Seg db_id=seg from=90 to=106)
RIBOSOMAL_L17 (db=PatternScan db_id=PS01167 from=34 to=56 evalue=0.0 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
RIBOSOMAL PROTEIN L17 (db=HMMPanther db_id=PTHR14413 from=1 to=149 evalue=7.7e-49 interpro_id=IPR000456 interpro_description=Ribosomal protein L17 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_99_13
uncultured bacterium, Bacteria
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Not on your lists |
comp(11360..12334)
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DNA-directed RNA polymerase subunit alpha n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=RPOA_MOOTA (db=UNIREF evalue=1.0e-83 bit_score=313.0 identity=51.82 coverage=90.7692307692308)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
seg (db=Seg db_id=seg from=237 to=251)
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ACD20_99_14
uncultured bacterium, Bacteria
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Not on your lists |
comp(12367..12987)
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rpsD; 30S ribosomal protein S4
rpsD_bact: ribosomal protein S4 (db=HMMTigr db_id=TIGR01017 from=3 to=206 evalue=9.1e-89 interpro_id=IPR005709 interpro_description=Ribosomal protein S4, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Biological Process: translation (GO:0006412), Cellular Component: small ribosomal subunit (GO:0015935))
Alpha-L RNA-binding motif (db=superfamily db_id=SSF55174 from=2 to=206 evalue=5.9e-67)
no description (db=Gene3D db_id=G3DSA:1.10.1050.10 from=1 to=111 evalue=2.2e-39)
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ACD20_99_15
uncultured bacterium, Bacteria
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Not on your lists |
comp(13023..13412)
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rpsK; 30S ribosomal protein S11
seg (db=Seg db_id=seg from=3 to=14)
RIBOSOMAL_S11 (db=PatternScan db_id=PS00054 from=97 to=119 evalue=0.0 interpro_id=IPR018102 interpro_description=Ribosomal S11, conserved site)
bact_S11: 30S ribosomal protein S11 (db=HMMTigr db_id=TIGR03632 from=10 to=126 evalue=1.2e-83 interpro_id=IPR019981 interpro_description=Ribosomal protein S11, bacterial-type GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_99_16
uncultured bacterium, Bacteria
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Not on your lists |
comp(13437..13802)
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30S ribosomal protein S13
30S ribosomal protein S13 n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HQN7_9FIRM (db=UNIREF evalue=3.0e-39 bit_score=163.0 identity=71.31 coverage=98.3606557377049)
coiled-coil (db=Coil db_id=coil from=46 to=67 evalue=NA)
RIBOSOMAL_S13_1 (db=PatternScan db_id=PS00646 from=87 to=100 evalue=0.0 interpro_id=IPR018269 interpro_description=Ribosomal protein S13, conserved site GO=Molecular Function: RNA binding (GO:0003723), Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_99_17
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria
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Not on your lists |
comp(13957..14070)
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rpmJ; 50S ribosomal protein L36
RIBOSOMAL_L36 (db=PatternScan db_id=PS00828 from=11 to=36 evalue=0.0 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
FAMILY NOT NAMED (db=HMMPanther db_id=PTHR18804 from=1 to=37 evalue=1.1e-21 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
Ribosomal_L36 (db=HMMPfam db_id=PF00444 from=1 to=37 evalue=1.2e-21 interpro_id=IPR000473 interpro_description=Ribosomal protein L36 GO=Molecular Function: structural constituent of ribosome (GO:0003735), Cellular Component: intracellular (GO:0005622), Cellular Component: ribosome (GO:0005840), Biological Process: translation (GO:0006412))
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ACD20_99_18
uncultured bacterium, Bacteria
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Not on your lists |
comp(14104..14319)
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Translation initiation factor IF-1 n=4 Tax=Veillonellaceae RepID=C9KPC9_9FIRM (db=UNIREF evalue=3.0e-27 bit_score=124.0 identity=81.94 coverage=97.2222222222222)
bacterial translation initiation factor 1 (bIF-1)
infA: translation initiation factor IF-1 (db=HMMTigr db_id=TIGR00008 from=2 to=70 evalue=9.1e-46 interpro_id=IPR004368 interpro_description=Translation initiation factor IF-1 GO=Molecular Function: translation initiation factor activity (GO:0003743), Biological Process: translational initiation (GO:0006413))
Nucleic acid-binding proteins (db=superfamily db_id=SSF50249 from=1 to=70 evalue=5.4e-29 interpro_id=IPR016027 interpro_description=Nucleic acid-binding, OB-fold-like)
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ACD20_99_19
uncultured bacterium, Bacteria
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Not on your lists |
14624..15034
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14624..15034 + (rbs_motif=AGGAG rbs_spacer=5-10bp)
Uncharacterized protein {ECO:0000313|EMBL:EKE03504.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
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