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berkeley_reactor_200306_planktonic_scaffold_295472

Search features with annotation key words

Displaying items 121-150 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_295472_118
unknown

Not on your lists

137726..137956
DNA (231bp) protein (77aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_119
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

137969..139543
DNA (1575bp) protein (525aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XGY8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF60909.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_120
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

Not on your lists

139628..141595
DNA (1968bp) protein (656aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q021N3_SOLUE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABJ84354.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
berkeley_reactor_200306_planktonic_scaffold_295472_121
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

141847..143991
DNA (2145bp) protein (715aa)
hypothetical protein id=12555824 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
hypothetical protein
Tax=RBG_16_Planctomycetes_55_9_curated
berkeley_reactor_200306_planktonic_scaffold_295472_122
Acetobacter tropicalis, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

144029..145372
DNA (1344bp) protein (448aa)
Uncharacterized protein n=1 Tax=Acetobacter tropicalis NBRC 101654 RepID=F7VG80_9PROT
Uncharacterized protein {ECO:0000313|EMBL:GAA09375.1}; TaxID=749388 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter tropicalis NBRC 101654.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_123
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

145513..146763
DNA (1251bp) protein (417aa)
L-rhamnose isomerase n=2 Tax=Singulisphaera acidiphila RepID=L0DQ95_SINAD
L-rhamnose isomerase
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_295472_124
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

146789..147955
DNA (1167bp) protein (389aa)
RhaT l-rhamnose-proton symport 2; K02856 L-rhamnose-H+ transport protein id=24442050 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=unknown genus=unknown taxon_order=Acidobacteriales taxon_class=Acidobacteriia phylum=Acidobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
rhamnose-proton symporter
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_295472_125

Not on your lists

147968..148282
DNA (315bp) protein (105aa)
Marine sediment metagenome DNA, contig: S06H3_C00747 {ECO:0000313|EMBL:GAI01788.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
L-rhamnose mutarotase id=4192149 bin=GWF2_Planctomycete_41_51 species=Asticcacaulis biprosthecium genus=Asticcacaulis taxon_order=Caulobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
L-rhamnose mutarotase
berkeley_reactor_200306_planktonic_scaffold_295472_126
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(148285..149199)
DNA (915bp) protein (305aa)
Serine O-acetyltransferase {ECO:0000313|EMBL:EEF57994.1}; EC=2.3.1.30 {ECO:0000313|EMBL:EEF57994.1};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Serine O-acetyltransferase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQ76_9BACT
cysE; Serine acetyltransferase
berkeley_reactor_200306_planktonic_scaffold_295472_127
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

149537..153043
DNA (3507bp) protein (1169aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSE9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57214.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_128
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

153220..156138
DNA (2919bp) protein (973aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00037D0D0B
Glycoside hydrolase family protein {ECO:0000313|EMBL:AIE83675.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
glycoside hydrolase family protein
berkeley_reactor_200306_planktonic_scaffold_295472_129
Pyrinomonas methylaliphatogenes, Pyrinomonas, Acidobacteria, Bacteria

Not on your lists

156422..158749
DNA (2328bp) protein (776aa)
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:CDM64194.1}; EC=3.2.1.51 {ECO:0000313|EMBL:CDM64194.1};; TaxID=454194 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Pyrinomonas.;" source="Pyrinomonas methylaliphatogenes.;"
alpha/beta hydrolase domain-containing protein; K15923 alpha-L-fucosidase 2 [EC:3.2.1.51] id=12554018 bin=CNBR_ACIDO species=unknown genus=unknown taxon_order=unknown taxon_class=Opitutae phylum=Verrucomicrobia tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
alpha/beta hydrolase domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_295472_130
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

159141..160244
DNA (1104bp) protein (368aa)
Type II secretion system protein E n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSX3_9BACT
Type II secretion system protein E {ECO:0000313|EMBL:EEF57057.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
general secretory pathway protein e
berkeley_reactor_200306_planktonic_scaffold_295472_131
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

160241..161254
DNA (1014bp) protein (338aa)
Type II secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSX4_9BACT
Type II secretion system protein {ECO:0000313|EMBL:EEF57058.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
type II secretion system F domain-containing protein
berkeley_reactor_200306_planktonic_scaffold_295472_132
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

161279..162433
DNA (1155bp) protein (385aa)
Type II secretory pathway component PulF-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSX5_9BACT
Type II secretory pathway component PulF-like protein {ECO:0000313|EMBL:EEF57059.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_133
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

162430..162813
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSX6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57060.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_134
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

162810..163319
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSX7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57061.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_135
unknown

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163316..163525
DNA (210bp) protein (70aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_136
unknown

Not on your lists

163522..163791
DNA (270bp) protein (90aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_137
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(163800..164366)
DNA (567bp) protein (189aa)
phosphoheptose isomerase (EC:5.3.1.-)
Phosphoheptose isomerase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZP7_9BACT
Phosphoheptose isomerase {ECO:0000313|EMBL:EDY20211.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
berkeley_reactor_200306_planktonic_scaffold_295472_138
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

164451..164666
DNA (216bp) protein (72aa)
Regulatory protein, FmdB family n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSM8_9BACT
Regulatory protein, FmdB family {ECO:0000313|EMBL:EEF57147.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
FmdB family regulatory protein
berkeley_reactor_200306_planktonic_scaffold_295472_139
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(164754..165929)
DNA (1176bp) protein (392aa)
aldose 1-epimerase (EC:5.1.3.3)
Aldose 1-epimerase n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q028V2_SOLUE
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_295472_140
unknown

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comp(166118..166402)
DNA (285bp) protein (95aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_141
Opitutaceae bacterium TAV1, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(166381..166770)
DNA (390bp) protein (130aa)
Putative membrane protein n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6B0L6_9BACT
hypothetical protein
Putative membrane protein {ECO:0000313|EMBL:EIQ00808.1}; TaxID=278956 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV1.;"
berkeley_reactor_200306_planktonic_scaffold_295472_142
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(166774..167109)
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZNL5_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB74449.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_295472_143
R_Acidobacteria_67_21, Acidobacteria, Bacteria

Not on your lists

comp(167158..168207)
DNA (1050bp) protein (350aa)
UspA domain-containing protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SI19_RHOMR
UspA domain-containing protein
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_67_21_curated
berkeley_reactor_200306_planktonic_scaffold_295472_144
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(168295..168483)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XQF1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57975.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_145
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(168931..169611)
DNA (681bp) protein (227aa)
Two component transcriptional regulator, LuxR family n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZTP9_OPITP
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACB74835.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
berkeley_reactor_200306_planktonic_scaffold_295472_146
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(169616..171226)
DNA (1611bp) protein (537aa)
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.13.3)
Multi-sensor signal transduction histidine kinase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XAW4_9BACT
Multi-sensor signal transduction histidine kinase {ECO:0000313|EMBL:EEF63149.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_147
Geoalkalibacter ferrihydriticus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(171271..173073)
DNA (1803bp) protein (601aa)
Uncharacterized protein {ECO:0000313|EMBL:KIH75594.1}; TaxID=1121915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibacter ferrihydriticus DSM 17813.;"
Sodium (Na+) symporter id=2974527 bin=GWF1_Xanthomonadales_69_6 species=Thauera linaloolentis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Xanthomonadales_69_6 organism_group=Gammaproteobacteria
sodium (Na+) symporter
Displaying items 121-150 of 168 in total

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