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berkeley_reactor_200306_planktonic_scaffold_295472

Search features with annotation key words

Displaying items 61-90 of 168 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
berkeley_reactor_200306_planktonic_scaffold_295472_61
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(69373..71283)
DNA (1911bp) protein (637aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9P5_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF63216.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter ATP-binding protein
berkeley_reactor_200306_planktonic_scaffold_295472_62
RifOxyA12_full_Lentisphaerae_48_11_curated, Lentisphaerae, Bacteria

Not on your lists

71622..74141
DNA (2520bp) protein (840aa)
beta-mannosidase (EC:3.2.1.25)
Glycosyl hydrolases family 2, immunoglobulin-like beta-sandwich domain id=3921262 bin=GWF2_Lentisphaerae_50_93 species=Verrucomicrobiae bacterium DG1235 genus=unknown taxon_order=Verrucomicrobiales taxon_class=Verrucomicrobiae phylum=Verrucomicrobia tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
Tax=RifOxyA12_full_Lentisphaerae_48_11_curated
berkeley_reactor_200306_planktonic_scaffold_295472_63
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

74342..77122
DNA (2781bp) protein (927aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XKE3_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59613.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_64
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(77123..78724)
DNA (1602bp) protein (534aa)
Peptide chain release factor 3 n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9P7_9BACT
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
peptide chain release factor 3
berkeley_reactor_200306_planktonic_scaffold_295472_trna_1
unknown

Not on your lists

78997..79070
DNA (74bp)
transferRNA Arg
berkeley_reactor_200306_planktonic_scaffold_295472_65
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

79354..79503
DNA (150bp) protein (50aa)
Putative helicase/DNA methylase hybrid protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PST0_RHIE6
helicase/DNA methylase hybrid protein
Putative helicase/DNA methylase hybrid protein {ECO:0000313|EMBL:ACE90096.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
berkeley_reactor_200306_planktonic_scaffold_295472_66
unknown

Not on your lists

79678..80088
DNA (411bp) protein (137aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_67
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

80643..81050
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D0H1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY19833.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
berkeley_reactor_200306_planktonic_scaffold_295472_68
unknown

Not on your lists

81516..82304
DNA (789bp) protein (263aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_69
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(82407..83210)
DNA (804bp) protein (268aa)
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:EDY22105.1}; EC=2.7.13.3 {ECO:0000313|EMBL:EDY22105.1};; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
multi-sensor hybrid histidine kinase (EC:2.7.13.3)
Multi-sensor hybrid histidine kinase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU67_9BACT
berkeley_reactor_200306_planktonic_scaffold_295472_70
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(83249..83617)
DNA (369bp) protein (123aa)
Hpt sensor hybrid histidine kinase (EC:2.7.13.3)
Hpt sensor hybrid histidine kinase n=1 Tax=Geobacter lovleyi (strain ATCC BAA-1151 / DSM 17278 / SZ) RepID=B3E8Z6_GEOLS
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_295472_71
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(83626..84000)
DNA (375bp) protein (125aa)
hypothetical protein n=1 Tax=zeta proteobacterium SCGC AB-137-I08 RepID=UPI0003630119
response regulator receiver protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_295472_72
GWF2_Verrucomicrobia_62_7_curated, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(84021..85235)
DNA (1215bp) protein (405aa)
Putative PAS/PAC sensor protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XC62_9BACT
PAS/PAC sensor protein
Tax=GWF2_Verrucomicrobia_62_7_curated
berkeley_reactor_200306_planktonic_scaffold_295472_73
gamma proteobacterium HTCC5015, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(85232..88828)
DNA (3597bp) protein (1199aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; TaxID=391615 species="Bacteria; Proteobacteria; Gammaproteobacteria.;" source="gamma proteobacterium HTCC5015.;"
Multi-sensor hybrid histidine kinase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JRM8_9GAMM
multi-sensor hybrid histidine kinase
berkeley_reactor_200306_planktonic_scaffold_295472_74
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(89014..90348)
DNA (1335bp) protein (445aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY8_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62334.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
antimicrobial peptide ABC transporter permease
berkeley_reactor_200306_planktonic_scaffold_295472_75
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(90335..91021)
DNA (687bp) protein (229aa)
ABC transporter related-protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY7_9BACT
ABC transporter related-protein {ECO:0000313|EMBL:EEF62333.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ABC transporter
berkeley_reactor_200306_planktonic_scaffold_295472_76
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(91197..93221)
DNA (2025bp) protein (675aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY6_9BACT
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:EEF62332.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
efflux transporter, RND family, MFP subunit, relted to HlyD
berkeley_reactor_200306_planktonic_scaffold_295472_77
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(93205..94821)
DNA (1617bp) protein (539aa)
Outer membrane protein-like protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XCY5_9BACT
Outer membrane protein-like protein {ECO:0000313|EMBL:EEF62331.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
outer membrane protein
berkeley_reactor_200306_planktonic_scaffold_295472_78
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

95302..96945
DNA (1644bp) protein (548aa)
radical SAM protein n=1 Tax=Schlesneria paludicola RepID=UPI00029B05F6
Radical SAM domain protein {ECO:0000313|EMBL:EEF58747.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
radical SAM protein
berkeley_reactor_200306_planktonic_scaffold_295472_79
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(96956..97576)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNR1_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF62931.1}; Flags: Precursor;; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
berkeley_reactor_200306_planktonic_scaffold_295472_80
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

97741..100338
DNA (2598bp) protein (866aa)
ATP-dependent chaperone ClpB n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XNL9_9BACT
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
ATP-dependent chaperone ClpB
berkeley_reactor_200306_planktonic_scaffold_295472_81
R_Dadabacteria_53_21, Dadabacteria, Bacteria

Not on your lists

comp(100347..101621)
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Desulfospira joergensenii RepID=UPI0003B73C7C
Tax=RIFCSPHIGHO2_12_FULL_Dadabacteria_53_21_curated
berkeley_reactor_200306_planktonic_scaffold_295472_82
Fimbriimonas ginsengisoli, Fimbriimonas, Fimbriimonadales, Fimbriimonadia, Armatimonadetes, Bacteria

Not on your lists

comp(102145..102600)
DNA (456bp) protein (152aa)
transposase n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001746596
transposase
Transposase {ECO:0000313|EMBL:AIE84828.1}; TaxID=661478 species="Bacteria; Armatimonadetes; Fimbriimonadia; Fimbriimonadales; Fimbriimonadaceae; Fimbriimonas.;" source="Fimbriimonas ginsengisoli Gsoil 348.;"
berkeley_reactor_200306_planktonic_scaffold_295472_83
Salpingoeca rosetta, Salpingoeca, Choanoflagellida, Eukaryota

Not on your lists

comp(102778..103140)
DNA (363bp) protein (121aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4B89
Putative uncharacterized protein {ECO:0000313|EMBL:EGD83632.1}; TaxID=946362 species="Eukaryota; Choanoflagellida; Salpingoecidae; Salpingoeca.;" source="Salpingoeca rosetta (strain ATCC 50818 / BSB-021).;"
protein of unknown function DUF2237
berkeley_reactor_200306_planktonic_scaffold_295472_84

Not on your lists

103247..104479
DNA (1233bp) protein (411aa)
hypothetical protein n=1 Tax=Pedobacter arcticus RepID=UPI0003811E0C
Drug resistance transporter, Bcr/CflA subfamily {ECO:0000313|EMBL:AIA19157.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
multidrug transporter
berkeley_reactor_200306_planktonic_scaffold_295472_85
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

104586..105446
DNA (861bp) protein (287aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XLP6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF59294.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
GntR family transcriptional regulator
berkeley_reactor_200306_planktonic_scaffold_295472_86
unknown

Not on your lists

comp(106110..106505)
DNA (396bp) protein (132aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-E04 RepID=UPI000363D7ED
berkeley_reactor_200306_planktonic_scaffold_295472_87
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

106608..107891
DNA (1284bp) protein (428aa)
Type II secretion system protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ7_9BACT
Type II secretion system protein {ECO:0000313|EMBL:EEF57197.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
general secretion pathway protein F
berkeley_reactor_200306_planktonic_scaffold_295472_88
unknown

Not on your lists

107891..108409
DNA (519bp) protein (173aa)

This feature has no annotations

berkeley_reactor_200306_planktonic_scaffold_295472_89
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

108406..108864
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XSJ9_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EEF57199.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
Displaying items 61-90 of 168 in total

View Taxonomy