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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38

NECEvent2014_3_5_Clostridiales_31_38
In projects: NECEvent2014_3_5

Consensus taxonomy: Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_3_5_UNK Curated version: NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_plum

Properties

Avg. coverage: 38.15 Longest contig: 215.07 Kbp Bin length: 4.04 Mbp GC content: 31.12 %
Contigs count: 93 Features count: 4020 rRNAs count: 1 tRNAs count: 49

Genome completeness

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 15 / 38 MC: 5
Displaying items 1-50 of 93 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_5_scaffold_1571 173_003_scaffold_1571
Phylum: Firmicutes (50%)
4 4308 bp 50.02 209.99 11.28
NECEvent2014_3_5_scaffold_1022 173_003_scaffold_1022
Genus: Clostridium (60%)
5 4516 bp 27.41 35.71 48.10
NECEvent2014_3_5_scaffold_512 173_003_scaffold_512
Order: Clostridiales (63.64%)
22 13563 bp 28.95 34.11 48.40
NECEvent2014_3_5_scaffold_682 173_003_scaffold_682
Phylum: Firmicutes (50%)
18 8433 bp 30.96 39.35 62.59
NECEvent2014_3_5_scaffold_710 173_003_scaffold_710
Genus: Clostridium (57.14%)
7 7779 bp 28.95 34.69 63.48
NECEvent2014_3_5_scaffold_2539 173_003_scaffold_2539
Species: Clostridium ultunense (100%)
2 1688 bp 32.41 39.63 63.98
NECEvent2014_3_5_scaffold_322 173_003_scaffold_322
Order: Clostridiales (62.96%)
27 27034 bp 29.79 38.72 69.47
NECEvent2014_3_5_scaffold_3323 173_003_scaffold_3323
Species: Clostridium sp. IBUN13A (100%)
2 1287 bp 25.49 46.62 72.03
NECEvent2014_3_5_scaffold_1701 173_003_scaffold_1701
Genus: Clostridium (66.67%)
3 2525 bp 31.45 33.68 74.14
NECEvent2014_3_5_scaffold_258 173_003_scaffold_258
Order: Clostridiales (64.1%)
39 33091 bp 30.16 38.09 76.59
NECEvent2014_3_5_scaffold_1722 173_003_scaffold_1722
Species: Caloranaerobacter azorensis (100%)
1 2495 bp 33.91 35.35 76.71
NECEvent2014_3_5_scaffold_716 173_003_scaffold_716
Order: Clostridiales (71.43%)
7 7707 bp 30.84 42.29 78.90
NECEvent2014_3_5_scaffold_707 173_003_scaffold_707
Genus: Clostridium (57.14%)
7 7831 bp 32.95 34.04 79.61
NECEvent2014_3_5_scaffold_297 173_003_scaffold_297
Order: Clostridiales (75%)
24 29045 bp 30.50 38.67 80.48
NECEvent2014_3_5_scaffold_346 173_003_scaffold_346
Order: Clostridiales (66.67%)
21 24330 bp 33.29 40.50 81.62
NECEvent2014_3_5_scaffold_1617 173_003_scaffold_1617
Order: Clostridiales (100%)
3 2670 bp 24.42 38.82 81.91
NECEvent2014_3_5_scaffold_439 173_003_scaffold_439
Order: Clostridiales (77.78%)
18 17607 bp 36.91 43.72 81.97
NECEvent2014_3_5_scaffold_243 173_003_scaffold_243
Order: Clostridiales (53.57%)
28 34413 bp 28.11 38.00 82.87
NECEvent2014_3_5_scaffold_97 173_003_scaffold_97
Order: Clostridiales (85.33%)
75 73729 bp 31.65 37.00 82.88
NECEvent2014_3_5_scaffold_132 173_003_scaffold_132
Order: Clostridiales (67.69%)
65 59726 bp 30.93 37.40 83.55
NECEvent2014_3_5_scaffold_554 173_003_scaffold_554
Order: Clostridiales (55.56%)
9 12021 bp 30.25 37.73 84.03
NECEvent2014_3_5_scaffold_140 173_003_scaffold_140
Order: Clostridiales (73.53%)
68 69866 bp 30.16 42.77 84.08
NECEvent2014_3_5_scaffold_1468 173_003_scaffold_1468 5 2954 bp 27.96 43.57 84.26
NECEvent2014_3_5_scaffold_210 173_003_scaffold_210
Phylum: Firmicutes (62.86%)
35 39890 bp 29.99 37.65 84.59
NECEvent2014_3_5_scaffold_90 173_003_scaffold_90
Order: Clostridiales (74.42%)
86 75684 bp 31.89 37.52 84.79
NECEvent2014_3_5_scaffold_164 173_003_scaffold_164
Order: Clostridiales (79.55%)
44 50659 bp 32.04 40.21 85.03
NECEvent2014_3_5_scaffold_645 173_003_scaffold_645
Order: Clostridiales (80%)
10 9270 bp 31.83 34.72 85.16
NECEvent2014_3_5_scaffold_885 173_003_scaffold_885
Order: Clostridiales (50%)
6 5454 bp 29.92 37.02 85.20
NECEvent2014_3_5_scaffold_200 173_003_scaffold_200
Order: Clostridiales (69.44%)
36 41203 bp 30.19 39.29 85.27
NECEvent2014_3_5_scaffold_398 173_003_scaffold_398
Order: Clostridiales (78.95%)
19 20206 bp 31.69 35.47 85.39
NECEvent2014_3_5_scaffold_89 173_003_scaffold_89
Order: Clostridiales (60.44%)
91 77088 bp 29.82 34.65 85.40
NECEvent2014_3_5_scaffold_339 173_003_scaffold_339
Species: Clostridium ultunense (60.71%)
28 25466 bp 31.88 33.86 85.54
NECEvent2014_3_5_scaffold_507 173_003_scaffold_507
Order: Clostridiales (64.29%)
14 13982 bp 31.23 39.17 85.97
NECEvent2014_3_5_scaffold_810 173_003_scaffold_810
Order: Clostridiales (63.64%)
11 6118 bp 28.60 34.13 86.06
NECEvent2014_3_5_scaffold_262 173_003_scaffold_262
Species: Clostridium ultunense (63.64%)
33 32514 bp 30.31 41.94 86.17
NECEvent2014_3_5_scaffold_314 173_003_scaffold_314
Order: Clostridiales (88%)
25 27554 bp 30.86 34.81 86.26
NECEvent2014_3_5_scaffold_599 173_003_scaffold_599
Genus: Clostridium (50%)
10 10525 bp 28.86 41.70 86.48
NECEvent2014_3_5_scaffold_2698 173_003_scaffold_2698
Species: Clostridium sp. DL-VIII (50%)
2 1590 bp 30.75 46.42 86.60
NECEvent2014_3_5_scaffold_52 173_003_scaffold_52
Species: Clostridium ultunense (61.26%)
111 108153 bp 29.90 36.29 86.69
NECEvent2014_3_5_scaffold_105 173_003_scaffold_105
Genus: Clostridium (57.81%)
64 70520 bp 30.43 35.31 86.86
NECEvent2014_3_5_scaffold_1188 173_003_scaffold_1188
Species: Clostridium ultunense (75%)
4 3672 bp 29.06 35.42 87.25
NECEvent2014_3_5_scaffold_173 173_003_scaffold_173
Order: Clostridiales (72.92%)
48 48725 bp 31.78 39.44 87.43
NECEvent2014_3_5_scaffold_69 173_003_scaffold_69
Genus: Clostridium (50%)
84 93957 bp 30.45 40.75 87.49
NECEvent2014_3_5_scaffold_591 173_003_scaffold_591
Order: Clostridiales (63.64%)
11 10858 bp 32.24 35.34 87.81
NECEvent2014_3_5_scaffold_130 173_003_scaffold_130
Genus: Clostridium (64.15%)
53 60616 bp 32.27 41.44 88.10
NECEvent2014_3_5_scaffold_104 173_003_scaffold_104
Order: Clostridiales (70.21%)
94 82235 bp 30.83 38.38 88.25
NECEvent2014_3_5_scaffold_74 173_003_scaffold_74
Order: Clostridiales (76.74%)
86 89971 bp 32.14 36.78 88.28
NECEvent2014_3_5_scaffold_41 173_003_scaffold_41
Genus: Clostridium (54.26%)
129 122368 bp 30.20 34.90 88.28
NECEvent2014_3_5_scaffold_127 173_003_scaffold_127
Order: Clostridiales (82.61%)
69 69304 bp 32.03 40.54 88.32
NECEvent2014_3_5_scaffold_400 173_003_scaffold_400
Species: Clostridium ultunense (77.78%)
36 20155 bp 33.52 39.34 88.33
Displaying items 1-50 of 93 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.