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NECEvent2014_3_5_Clostridium_ultunense-rel_31_38

NECEvent2014_3_5_Clostridiales_31_38
In projects: NECEvent2014_3_5

Consensus taxonomy: Clostridiales  →  Clostridia  →  Firmicutes  →  Bacteria

Metagenomic Context

Parent: NECEvent2014_3_5_UNK Curated version: NECEvent2014_3_5_Clostridium_ultunense-rel_31_38_plum

Properties

Avg. coverage: 38.15 Longest contig: 215.07 Kbp Bin length: 4.04 Mbp GC content: 31.12 %
Contigs count: 93 Features count: 4020 rRNAs count: 1 tRNAs count: 49

Genome completeness

near complete RP 48 / 55 MC: 1 BSCG 50 / 51 MC: 4 ASCG 15 / 38 MC: 5
Displaying items 1-50 of 93 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
NECEvent2014_3_5_scaffold_2819 173_003_scaffold_2819
Species: Geomicrobium sp. JCM 19037 (100%)
1 1520 bp 36.51 34.74 99.87
NECEvent2014_3_5_scaffold_619 173_003_scaffold_619
Genus: Clostridium (66.67%)
6 9948 bp 32.56 40.26 95.99
NECEvent2014_3_5_scaffold_158 173_003_scaffold_158
Species: Clostridium ultunense (74.51%)
51 51246 bp 31.44 33.84 93.66
NECEvent2014_3_5_scaffold_530 173_003_scaffold_530
Species: Clostridium ultunense (66.67%)
12 12910 bp 31.79 33.36 92.86
NECEvent2014_3_5_scaffold_204 173_003_scaffold_204
Order: Clostridiales (73.17%)
41 40802 bp 32.29 40.26 92.63
NECEvent2014_3_5_scaffold_960 173_003_scaffold_960
Genus: Clostridium (60%)
5 4932 bp 31.43 35.68 92.15
NECEvent2014_3_5_scaffold_2644 173_003_scaffold_2644
Species: Geomicrobium sp. JCM 19039 (50%)
2 2396 bp 37.15 38.94 91.90
NECEvent2014_3_5_scaffold_63 173_003_scaffold_63
Species: Clostridium ultunense (58.06%)
93 99359 bp 29.26 33.59 91.58
NECEvent2014_3_5_scaffold_154 173_003_scaffold_154
Genus: Clostridium (68.89%)
45 52573 bp 30.39 34.88 91.55
NECEvent2014_3_5_scaffold_11 173_003_scaffold_11
Species: Clostridium ultunense (74.12%)
228 208351 bp 29.63 34.26 91.18
NECEvent2014_3_5_scaffold_136 173_003_scaffold_136
Order: Clostridiales (75.34%)
73 100001 bp 32.34 38.95 91.17
NECEvent2014_3_5_scaffold_615 173_003_scaffold_615
Species: Clostridium ultunense (66.67%)
9 9975 bp 31.08 36.56 91.16
NECEvent2014_3_5_scaffold_84 173_003_scaffold_84
Order: Clostridiales (87.3%)
63 82383 bp 32.44 38.61 90.91
NECEvent2014_3_5_scaffold_441 173_003_scaffold_441
Species: Clostridium ultunense (50%)
18 17597 bp 32.58 36.63 90.48
NECEvent2014_3_5_scaffold_10 173_003_scaffold_10
Genus: Clostridium (59.69%)
196 214080 bp 31.39 38.50 90.40
NECEvent2014_3_5_scaffold_142 173_003_scaffold_142
Genus: Clostridium (50%)
58 57103 bp 30.80 41.68 90.35
NECEvent2014_3_5_scaffold_357 173_003_scaffold_357
Order: Clostridiales (70.27%)
37 23348 bp 29.30 31.96 90.25
NECEvent2014_3_5_scaffold_4042 173_003_scaffold_4042
Species: Streptococcus anginosus (50%)
2 1085 bp 35.67 52.53 90.14
NECEvent2014_3_5_scaffold_487 173_003_scaffold_487
Order: Clostridiales (92.86%)
14 15002 bp 34.78 39.40 90.13
NECEvent2014_3_5_scaffold_548 173_003_scaffold_548
Genus: Clostridium (61.9%)
21 17292 bp 31.43 57.47 90.06
NECEvent2014_3_5_scaffold_329 173_003_scaffold_329
Order: Clostridiales (73.91%)
23 26295 bp 31.49 40.60 90.04
NECEvent2014_3_5_scaffold_334 173_003_scaffold_334
Order: Clostridiales (80%)
25 26082 bp 35.53 42.04 89.96
NECEvent2014_3_5_scaffold_197 173_003_scaffold_197
Order: Clostridiales (77.78%)
45 41745 bp 32.61 38.72 89.88
NECEvent2014_3_5_scaffold_278 173_003_scaffold_278
Order: Clostridiales (68.97%)
29 30960 bp 31.81 36.94 89.80
NECEvent2014_3_5_scaffold_242 173_003_scaffold_242
Order: Clostridiales (72.73%)
33 34913 bp 31.43 35.65 89.77
NECEvent2014_3_5_scaffold_477 173_003_scaffold_477
Species: Clostridium ultunense (57.14%)
14 15968 bp 28.80 34.16 89.71
NECEvent2014_3_5_scaffold_1100 173_003_scaffold_1100
Domain: Bacteria (100%)
5 4028 bp 28.00 38.92 89.67
NECEvent2014_3_5_scaffold_402 173_003_scaffold_402
Species: Clostridium ultunense (61.11%)
18 20068 bp 30.73 41.87 89.62
NECEvent2014_3_5_scaffold_112 173_003_scaffold_112
Order: Clostridiales (78.26%)
69 67690 bp 31.00 42.65 89.48
NECEvent2014_3_5_scaffold_60 173_003_scaffold_60
Order: Clostridiales (80.36%)
112 101772 bp 30.84 38.90 89.42
NECEvent2014_3_5_scaffold_129 173_003_scaffold_129
Order: Clostridiales (67.31%)
52 62088 bp 31.20 37.73 89.38
NECEvent2014_3_5_scaffold_94 173_003_scaffold_94
Order: Clostridiales (87.5%)
112 143795 bp 31.94 39.31 89.32
NECEvent2014_3_5_scaffold_51 173_003_scaffold_51
Order: Clostridiales (79.81%)
104 108291 bp 32.36 42.24 89.32
NECEvent2014_3_5_scaffold_138 173_003_scaffold_138
Species: Clostridium ultunense (52.54%)
59 57578 bp 31.60 36.41 89.14
NECEvent2014_3_5_scaffold_203 173_003_scaffold_203
Order: Clostridiales (60%)
55 40852 bp 31.58 37.02 89.09
NECEvent2014_3_5_scaffold_122 173_003_scaffold_122
Genus: Clostridium (61.54%)
65 64138 bp 30.06 35.06 89.08
NECEvent2014_3_5_scaffold_738 173_003_scaffold_738
Species: Clostridium ultunense (100%)
6 7350 bp 31.48 44.18 89.06
NECEvent2014_3_5_scaffold_179 173_003_scaffold_179
Genus: Clostridium (57.89%)
76 83271 bp 30.62 37.76 89.03
NECEvent2014_3_5_scaffold_13 173_003_scaffold_13
Order: Clostridiales (60%)
253 215073 bp 31.03 38.31 88.65
NECEvent2014_3_5_scaffold_340 173_003_scaffold_340
Order: Clostridiales (86.67%)
30 25145 bp 31.62 36.20 88.61
NECEvent2014_3_5_scaffold_159 173_003_scaffold_159
Species: Clostridium ultunense (79.17%)
48 51164 bp 31.72 38.45 88.54
NECEvent2014_3_5_scaffold_450 173_003_scaffold_450
Order: Clostridiales (100%)
13 17287 bp 32.54 34.19 88.49
NECEvent2014_3_5_scaffold_53 173_003_scaffold_53
Order: Clostridiales (83%)
100 107986 bp 31.20 37.37 88.36
NECEvent2014_3_5_scaffold_400 173_003_scaffold_400
Species: Clostridium ultunense (77.78%)
36 20155 bp 33.52 39.34 88.33
NECEvent2014_3_5_scaffold_127 173_003_scaffold_127
Order: Clostridiales (82.61%)
69 69304 bp 32.03 40.54 88.32
NECEvent2014_3_5_scaffold_41 173_003_scaffold_41
Genus: Clostridium (54.26%)
129 122368 bp 30.20 34.90 88.28
NECEvent2014_3_5_scaffold_74 173_003_scaffold_74
Order: Clostridiales (76.74%)
86 89971 bp 32.14 36.78 88.28
NECEvent2014_3_5_scaffold_104 173_003_scaffold_104
Order: Clostridiales (70.21%)
94 82235 bp 30.83 38.38 88.25
NECEvent2014_3_5_scaffold_130 173_003_scaffold_130
Genus: Clostridium (64.15%)
53 60616 bp 32.27 41.44 88.10
NECEvent2014_3_5_scaffold_591 173_003_scaffold_591
Order: Clostridiales (63.64%)
11 10858 bp 32.24 35.34 87.81
Displaying items 1-50 of 93 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.