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SCNpilot_expt_1000_bf_scaffold_1714_curated

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1714_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..174)
DNA (174bp) protein (58aa)
cutL; carbon monoxide dehydrogenase (EC:1.2.99.2); K03520 carbon-monoxide dehydrogenase large subunit [EC:1.2.99.2]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRY9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41128.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1590..2978)
DNA (1389bp) protein (463aa)
UbiD family decarboxylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PRY2_9BRAD
UbiD family decarboxylase {ECO:0000313|EMBL:EKS41123.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
carboxylyase-like protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_3
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3002..3616)
DNA (615bp) protein (205aa)
Aromatic acid decarboxylase {ECO:0000256|RuleBase:RU362054}; EC=4.1.1.- {ECO:0000256|RuleBase:RU362054};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
3-octaprenyl-4-hydroxybenzoate carboxy-lyase; K03186 3-octaprenyl-4-hydroxybenzoate carboxy-lyase UbiX [EC:4.1.1.-]
Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PEP9_9BRAD
SCNpilot_expt_1000_bf_scaffold_1714_curated_4
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3884..4816)
DNA (933bp) protein (311aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000366BA68
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD86424.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_5
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4886..6328)
DNA (1443bp) protein (481aa)
araE; Alpha-ketoglutaric semialdehyde dehydrogenase (EC:1.2.1.24 1.2.1.26)
Aldehyde dehydrogenase n=1 Tax=Sagittula stellata E-37 RepID=A3K4A6_9RHOB
Aldehyde dehydrogenase {ECO:0000313|EMBL:EBA07805.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_6
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6356..7378)
DNA (1023bp) protein (341aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00036A00D9
acyl-CoA dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_58_curated
SCNpilot_expt_1000_bf_scaffold_1714_curated_7
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7378..8529)
DNA (1152bp) protein (384aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000382DAD0
acyl-CoA dehydrogenase-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
SCNpilot_expt_1000_bf_scaffold_1714_curated_8
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8537..10084)
DNA (1548bp) protein (516aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000377CFEF
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II {ECO:0000313|EMBL:EIG57823.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_9
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10098..10517)
DNA (420bp) protein (140aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B06_RHOPB
hypothetical protein; K07068
Uncharacterized protein {ECO:0000313|EMBL:ABD86430.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_10
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10518..11684)
DNA (1167bp) protein (389aa)
thiolase n=1 Tax=Amorphus coralli RepID=UPI0003612FD0
thiolase
Thiolase {ECO:0000313|EMBL:ABD86429.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_11
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11691..12485)
DNA (795bp) protein (265aa)
enoyl-CoA hydratase/isomerase; K01715 3-hydroxybutyryl-CoA dehydratase [EC:4.2.1.55]
enoyl-CoA hydratase n=1 Tax=Amorphus coralli RepID=UPI0003683549
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABD86428.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_12
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12524..13285)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00035F19D7
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:EIG57827.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_13
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13282..14106)
DNA (825bp) protein (275aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000366ABDB
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:EIG57828.1}; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_14
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14176..15165)
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI000371D36C
twin-arginine translocation pathway signal; K02051 NitT/TauT family transport system substrate-binding protein
Twin-arginine translocation pathway signal {ECO:0000313|EMBL:ABD86425.1}; Flags: Precursor;; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15636..16088)
DNA (453bp) protein (151aa)
succinic semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Succinate-semialdehyde dehydrogenase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8NWX4_9BRAD
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:EKS31935.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_16
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17231..17995)
DNA (765bp) protein (255aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00035CB588
3-ketoacyl-ACP reductase {ECO:0000313|EMBL:AIJ49682.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1714_curated_17
GWA2_Polynucleobacter_45_21_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18084..19259)
DNA (1176bp) protein (392aa)
ABC transporter substrate-binding protein n=1 Tax=Rhodopseudomonas sp. B29 RepID=UPI00034DA35E
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=GWA2_Polynucleobacter_45_21_curated
SCNpilot_expt_1000_bf_scaffold_1714_curated_18
Pseudomonas sp. GM16, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19374..19898
DNA (525bp) protein (175aa)
Transcriptional regulator n=2 Tax=Pseudomonas RepID=J3E6Z5_9PSED
Transcriptional regulator {ECO:0000313|EMBL:EJM06380.1}; Flags: Precursor;; TaxID=1144322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM16.;"
putative MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1714_curated_19
Rhodococcus opacus, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19952..21199)
DNA (1248bp) protein (416aa)
thcD; rhodocoxin reductase (EC:1.18.1.-); K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3]
Rhodocoxin reductase {ECO:0000313|EMBL:BAH53627.1}; EC=1.18.1.- {ECO:0000313|EMBL:BAH53627.1};; TaxID=632772 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus opacus (strain B4).;"
Rhodocoxin reductase n=1 Tax=Rhodococcus opacus (strain B4) RepID=C1AVD7_RHOOB
SCNpilot_expt_1000_bf_scaffold_1714_curated_20
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21196..21453)
DNA (258bp) protein (86aa)
ferredoxin, 2fe-2s fdii electron transport iron-sulfur protein n=1 Tax=Oceanicola sp. S124 RepID=UPI00025578A8
Ferredoxin, 2Fe-2S {ECO:0000313|EMBL:CDP54103.1}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
thcC; rhodocoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_1714_curated_21
Celeribacter baekdonensis, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21532..22731)
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Celeribacter baekdonensis B30 RepID=K2IY56_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EKE67552.1}; TaxID=1208323 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter baekdonensis B30.;"
cytochrome P450
SCNpilot_expt_1000_bf_scaffold_1714_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22899..23612)
DNA (714bp) protein (238aa)
branched-chain amino acid ABC transporter n=1 Tax=Afipia birgiae RepID=UPI00036F9B13
Branched-chain amino acid ABC transporter {ECO:0000313|EMBL:KIZ40064.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
branched-chain amino acid ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23593..24357)
DNA (765bp) protein (255aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PBR8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35753.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24354..25355)
DNA (1002bp) protein (334aa)
branched-chain amino acid ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI000318242B
Branched-chain amino acid transport system permease {ECO:0000313|EMBL:EGP06412.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25356..25829)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P812_9BRAD
ABC transporter permease {ECO:0000313|EMBL:KIZ40059.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25865..26209)
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P6X7_9BRAD
ABC transporter permease {ECO:0000313|EMBL:KIZ40059.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26424..27599)
DNA (1176bp) protein (392aa)
amino acid-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002F60653
Amino acid-binding protein {ECO:0000313|EMBL:KIZ40057.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1714_curated_28
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27668..29098)
DNA (1431bp) protein (477aa)
glutamate--ammonia ligase; K01915 glutamine synthetase [EC:6.3.1.2]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P1P0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36512.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_1714_curated_29
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29120..30478)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PDT0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS36513.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Rieske (2Fe-2S) iron-sulfur domain
SCNpilot_expt_1000_bf_scaffold_1714_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30721..31059)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI000368B2B3
Uncharacterized protein {ECO:0000313|EMBL:EKS36517.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
5-carboxymethyl-2-hydroxymuconate isomerase
Displaying items 1-30 of 38 in total

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