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SCNpilot_expt_1000_bf_scaffold_2330_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2330_curated_1
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..264)
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN65_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42224.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
motB; chemotaxis protein MotB
SCNpilot_expt_1000_bf_scaffold_2330_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(731..1504)
DNA (774bp) protein (258aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PV37_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42223.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
MotA/TolQ/ExbB proton channel; K02556 chemotaxis protein MotA
SCNpilot_expt_1000_bf_scaffold_2330_curated_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1634..2512)
DNA (879bp) protein (293aa)
CDP-diacylglycerol--serine O-phosphatidyltransferase {ECO:0000313|EMBL:EGP07872.1}; EC=2.7.8.8 {ECO:0000313|EMBL:EGP07872.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
CDP-diacylglycerol--serine O-phosphatidyltransferase; K00998 phosphatidylserine synthase [EC:2.7.8.8]
CDP-diacylglycerol--serine O-phosphatidyltransferase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLL9_9BRAD
SCNpilot_expt_1000_bf_scaffold_2330_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2584..3282)
DNA (699bp) protein (233aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|HAMAP-Rule:MF_00664, ECO:0000256|SAAS:SAAS00093350};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
phosphatidylserine decarboxylase (EC:4.1.1.65); K01613 phosphatidylserine decarboxylase [EC:4.1.1.65]
Phosphatidylserine decarboxylase proenzyme n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKW5_9BRAD
SCNpilot_expt_1000_bf_scaffold_2330_curated_5
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3317..5290)
DNA (1974bp) protein (658aa)
metal ABC transporter permease n=1 Tax=Afipia birgiae RepID=UPI0002DC5B78
Uncharacterized protein {ECO:0000313|EMBL:EKS42220.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial
SCNpilot_expt_1000_bf_scaffold_2330_curated_6
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5502..6107
DNA (606bp) protein (202aa)
TIGR00730 family protein n=2 Tax=Bradyrhizobiaceae RepID=K8PTJ7_9BRAD
TIGR00730 family protein {ECO:0000313|EMBL:EKS42870.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein; K06966
SCNpilot_expt_1000_bf_scaffold_2330_curated_7
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6122..6502)
DNA (381bp) protein (127aa)
Uncharacterized protein n=2 Tax=Bradyrhizobiaceae RepID=K8PPX9_9BRAD
Putative lyase {ECO:0000313|EMBL:EGP07868.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2330_curated_8
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6532..8130)
DNA (1599bp) protein (533aa)
(R)-citramalate synthase {ECO:0000313|EMBL:EGP07867.1}; EC=2.3.1.182 {ECO:0000313|EMBL:EGP07867.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
alpha-isopropylmalate synthase (EC:2.3.3.-); K01649 2-isopropylmalate synthase [EC:2.3.3.13]
(R)-citramalate synthase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLL4_9BRAD
SCNpilot_expt_1000_bf_scaffold_2330_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8127..8594)
DNA (468bp) protein (156aa)
N-acetyltransferase; K03830 putative acetyltransferase [EC:2.3.1.-]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKV8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42216.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2330_curated_10
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8657..8770)
DNA (114bp) protein (38aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QLL2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP07865.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_2330_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8767..10176)
DNA (1410bp) protein (470aa)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
cysS; cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN52_9BRAD
SCNpilot_expt_1000_bf_scaffold_2330_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10484..10765
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PV24_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42213.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2330_curated_13
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10873..12042
DNA (1170bp) protein (390aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PWZ9_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42863.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2330_curated_14
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12045..13799)
DNA (1755bp) protein (585aa)
nadE; NAD synthetase (EC:6.3.1.5); K01916 NAD+ synthase [EC:6.3.1.5] rbh
NAD+ synthetase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PJQ6_9BRAD
NAD+ synthetase {ECO:0000313|EMBL:EKS42862.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_2330_curated_15
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13856..14224)
DNA (369bp) protein (123aa)
diacylglycerol kinase; K00901 diacylglycerol kinase [EC:2.7.1.107]
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN45_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42209.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2330_curated_16
Bradyrhizobium sp. LTSP849, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14224..15612)
DNA (1389bp) protein (463aa)
phospho-2-dehydro-3-deoxyheptonate aldolase; K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1H5P6_9BRAD
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000313|EMBL:KJC52666.1}; TaxID=1615890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP849.;"
SCNpilot_expt_1000_bf_scaffold_2330_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15793..17178)
DNA (1386bp) protein (462aa)
glutathione reductase; K00383 glutathione reductase (NADPH) [EC:1.8.1.7]
Glutathione-disulfide reductase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PHS8_9BRAD
Glutathione-disulfide reductase {ECO:0000313|EMBL:EKS42207.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_2330_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17197..17700)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PKV0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42206.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein; K09924 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2330_curated_19
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17725..18423)
DNA (699bp) protein (233aa)
Ribose-5-phosphate isomerase A {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00020824}; EC=5.3.1.6 {ECO:0000256|HAMAP-Rule:MF_00170, ECO:0000256|SAAS:SAAS00087684};; Phosphoriboisomerase A {ECO:0000256|HAMAP-Rule:MF_00170}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ribose 5-phosphate isomerase; K01807 ribose 5-phosphate isomerase A [EC:5.3.1.6]
ribose 5-phosphate isomerase n=1 Tax=Afipia birgiae RepID=UPI0002FA533B
SCNpilot_expt_1000_bf_scaffold_2330_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18581..18835
DNA (255bp) protein (85aa)
gph; phosphoglycolate phosphatase; K01091 phosphoglycolate phosphatase [EC:3.1.3.18]
Phosphoglycolate phosphatase, bacterial n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PN40_9BRAD
Phosphoglycolate phosphatase, bacterial {ECO:0000313|EMBL:EKS42204.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying 20 items

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