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SCNpilot_expt_1000_bf_scaffold_687_curated

Search features with annotation key words

Displaying items 1-30 of 125 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_687_curated_1
unknown

Not on your lists

comp(155..259)
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_687_curated_2
unknown

Not on your lists

608..847
DNA (240bp) protein (80aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_687_curated_3
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1068..2741)
DNA (1674bp) protein (558aa)
RND transporter n=1 Tax=Afipia birgiae RepID=UPI000374E580
Uncharacterized protein {ECO:0000313|EMBL:EGP07694.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hpnN; hopanoid biosynthesis associated RND transporter like protein HpnN; K07003
SCNpilot_expt_1000_bf_scaffold_687_curated_4
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2954..4870
DNA (1917bp) protein (639aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dxs2; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7)
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL40_9BRAD
SCNpilot_expt_1000_bf_scaffold_687_curated_5
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4875..5852
DNA (978bp) protein (326aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ispH; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Afipia birgiae RepID=UPI0003115B42
SCNpilot_expt_1000_bf_scaffold_687_curated_6
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5859..7049
DNA (1191bp) protein (397aa)
Hopanoid biosynthesis associated radical SAM protein HpnH n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PK55_9BRAD
Hopanoid biosynthesis associated radical SAM protein HpnH {ECO:0000313|EMBL:EKS41951.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_687_curated_7
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7223..7945)
DNA (723bp) protein (241aa)
Hopanoid-associated phosphorylase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PPH8_9BRAD
Hopanoid-associated phosphorylase {ECO:0000313|EMBL:EKS42714.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_687_curated_8
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7948..9918)
DNA (1971bp) protein (657aa)
shc; squalene-hopene cyclase (EC:5.4.99.17); K06045 squalene-hopene cyclase [EC:5.4.99.17 4.2.1.129]
Squalene-hopene cyclase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PWJ1_9BRAD
Squalene-hopene cyclase {ECO:0000313|EMBL:EKS42713.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_9
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9946..10128)
DNA (183bp) protein (61aa)
Squalene-associated FAD-dependent desaturase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PUA5_9BRAD
Squalene-associated FAD-dependent desaturase {ECO:0000313|EMBL:EKS41948.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
amine oxidase
SCNpilot_expt_1000_bf_scaffold_687_curated_10
unknown

Not on your lists

10496..11278
DNA (783bp) protein (261aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_687_curated_11
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11167..12024)
DNA (858bp) protein (286aa)
squalene/phytoene synthase; K02291 phytoene synthase [EC:2.5.1.32]
Squalene synthase HpnD n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PH19_9BRAD
Squalene synthase HpnD {ECO:0000313|EMBL:EKS41947.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_12
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12026..12907)
DNA (882bp) protein (294aa)
Squalene synthase HpnC n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PK52_9BRAD
Squalene synthase HpnC {ECO:0000313|EMBL:EKS41946.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_687_curated_13
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12904..14076)
DNA (1173bp) protein (391aa)
Hopene-associated glycosyltransferase HpnB n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQY1_9BRAD
Hopene-associated glycosyltransferase HpnB {ECO:0000313|EMBL:EKS41945.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hopene-associated glycosyltransferase HpnB
SCNpilot_expt_1000_bf_scaffold_687_curated_14
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14207..15430)
DNA (1224bp) protein (408aa)
NAD(FAD)-utilizing dehydrogenase n=1 Tax=Afipia birgiae RepID=UPI0002DF2639
HI0933 family flavoprotein {ECO:0000313|EMBL:EKS41944.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_687_curated_15
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15478..17064)
DNA (1587bp) protein (529aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PJA0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42707.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
methylthiotransferase
SCNpilot_expt_1000_bf_scaffold_687_curated_16
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17265..18266
DNA (1002bp) protein (334aa)
Quinone oxidoreductase {ECO:0000313|EMBL:EGP07680.1}; EC=1.6.5.5 {ECO:0000313|EMBL:EGP07680.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
Quinone oxidoreductase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL27_9BRAD
oxidoreductase; K07119 rbh
SCNpilot_expt_1000_bf_scaffold_687_curated_17
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18397..19683
DNA (1287bp) protein (429aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI00031703F7
Uncharacterized protein {ECO:0000313|EMBL:EKS41941.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
major facilitator superfamily protein
SCNpilot_expt_1000_bf_scaffold_687_curated_18
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19813..21402
DNA (1590bp) protein (530aa)
gamma-glutamyltransferase (EC:2.3.2.2); K00681 gamma-glutamyltranspeptidase [EC:2.3.2.2]
Gamma-glutamyltransferase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQX8_9BRAD
Gamma-glutamyltransferase {ECO:0000313|EMBL:EKS41940.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_19
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21552..22211)
DNA (660bp) protein (220aa)
kdgA; KHG-KDPG bifunctional aldolase; K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PPG8_9BRAD
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:EKS42704.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_20
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22211..23113)
DNA (903bp) protein (301aa)
ribokinase-like domain-containing protein; K00874 2-dehydro-3-deoxygluconokinase [EC:2.7.1.45]
ketodeoxygluconokinase n=1 Tax=Afipia birgiae RepID=UPI00036DE281
Uncharacterized protein {ECO:0000313|EMBL:EKS41938.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_21
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23160..24143)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PJ94_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42702.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
NAD-dependent epimerase/dehydratase
SCNpilot_expt_1000_bf_scaffold_687_curated_22
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24289..25200)
DNA (912bp) protein (304aa)
Maltose/maltodextrin ABC transporter, permease protein MalG n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL21_9BRAD
Maltose/maltodextrin ABC transporter, permease protein MalG {ECO:0000313|EMBL:EGP07674.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
ABC transporter inner membrane protein; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_687_curated_23
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25435..26394)
DNA (960bp) protein (320aa)
Maltose/maltodextrin ABC transporter, permease protein MalF n=2 Tax=Bradyrhizobiaceae RepID=F7QL20_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42700.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
binding-protein-dependent transport system inner membrane protein; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_687_curated_24
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26517..27842)
DNA (1326bp) protein (442aa)
ABC transporter substrate-binding protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL19_9BRAD
ABC transporter substrate-binding protein {ECO:0000313|EMBL:EGP07672.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
twin-arginine translocation pathway signal
SCNpilot_expt_1000_bf_scaffold_687_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28001..29068)
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PU93_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41933.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter-like protein; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_687_curated_26

Not on your lists

comp(29272..30657)
DNA (1386bp) protein (462aa)
Putative uncharacterized protein n=1 Tax=uncultured marine microorganism HF4000_APKG5H11 RepID=B3T8I6_9ZZZZ
Putative uncharacterized protein {ECO:0000313|EMBL:ABZ08895.1}; TaxID=455550 species="unclassified sequences; environmental samples.;" source="uncultured marine microorganism HF4000_APKG5H11.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_27
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30957..31115
DNA (159bp) protein (53aa)
Xylonate dehydratase {ECO:0000313|EMBL:EGP07669.1}; EC=4.2.1.82 {ECO:0000313|EMBL:EGP07669.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dihydroxy-acid dehydratase; K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Xylonate dehydratase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QL16_9BRAD
SCNpilot_expt_1000_bf_scaffold_687_curated_28
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31245..31979
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8PT38_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS42695.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
short-chain dehydrogenase/reductase SDR
SCNpilot_expt_1000_bf_scaffold_687_curated_29
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32139..32885
DNA (747bp) protein (249aa)
short-chain dehydrogenase/reductase SDR; K00059 3-oxoacyl-[acyl-carrier protein] reductase [EC:1.1.1.100]
3-oxoacyl-ACP reductase n=1 Tax=Afipia birgiae RepID=UPI0002FD17CB
2-keto-3-deoxy-L-fuconate dehydrogenase {ECO:0000313|EMBL:EGP07667.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_expt_1000_bf_scaffold_687_curated_30
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33131..34798)
DNA (1668bp) protein (556aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PU89_9BRAD
Dihydroxy-acid dehydratase {ECO:0000313|EMBL:EKS41928.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Displaying items 1-30 of 125 in total

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