ggKbase home page

SCNpilot_expt_300_bf_scaffold_228_curated

Search features with annotation key words

Displaying items 1-30 of 177 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_300_bf_scaffold_228_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..133
DNA (132bp) protein (44aa)
P-type conjugative transfer protein TrbJ n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WYQ7_COMTE
conjugal transfer protein Trbj
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:AIJ46182.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
SCNpilot_expt_300_bf_scaffold_228_curated_2
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

145..444
DNA (300bp) protein (100aa)
UPI0003D6A229 related cluster n=1 Tax=unknown RepID=UPI0003D6A229
Uncharacterized protein {ECO:0000313|EMBL:AKC05777.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
putative lipoprotein
SCNpilot_expt_300_bf_scaffold_228_curated_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

441..1721
DNA (1281bp) protein (427aa)
conjugal transfer protein TrbL n=1 Tax=Pseudomonas aeruginosa RepID=UPI0003103086
TrbL/VirB6 plasmid conjugal transfer protein {ECO:0000313|EMBL:AKC05778.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_300_bf_scaffold_228_curated_4
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1733..2437
DNA (705bp) protein (235aa)
conjugal transfer protein TrbF n=1 Tax=Pseudomonas aeruginosa RepID=UPI0002F0CC74
VirB8 protein {ECO:0000313|EMBL:AKC05779.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
SCNpilot_expt_300_bf_scaffold_228_curated_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2434..3426
DNA (993bp) protein (331aa)
conjugative transfer protein TrbG n=1 Tax=Pseudomonas aeruginosa RepID=UPI0002EF05C7
Type IV secretion system protein PtlF {ECO:0000313|EMBL:AKC05780.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
p-type conjugative transfer protein trbg
SCNpilot_expt_300_bf_scaffold_228_curated_6
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3429..4688
DNA (1260bp) protein (420aa)
Conjugation TrbI family protein n=1 Tax=Ralstonia sp. PBA RepID=I9W3N0_9RALS
Conjugation TrbI family protein {ECO:0000313|EMBL:EIZ03004.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
SCNpilot_expt_300_bf_scaffold_228_curated_7
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4685..4930
DNA (246bp) protein (82aa)
conjugal transfer protein n=1 Tax=Pseudomonas aeruginosa RepID=UPI0002FBBFDA
Uncharacterized protein {ECO:0000313|EMBL:AKC05782.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
hypothetical protein
SCNpilot_expt_300_bf_scaffold_228_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6153..6335
DNA (183bp) protein (61aa)
TonB family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G440_ALIDK
TonB family protein; K03832 periplasmic protein TonB
TonB family protein {ECO:0000313|EMBL:GAO23033.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6351..7070
DNA (720bp) protein (240aa)
MotA/TolQ/ExbB proton channel n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP0_ALIDB
mota/tolq/exbb proton channel; K03561 biopolymer transport protein ExbB
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:AEB85185.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7077..7487
DNA (411bp) protein (137aa)
Outer membrane transport energization protein ExbD n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8J4_ACISJ
biopolymer transport protein ExbD/TolR; K03559 biopolymer transport protein ExbD
Outer membrane transport energization protein ExbD {ECO:0000313|EMBL:ABM42569.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_expt_300_bf_scaffold_228_curated_11
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7583..7810
DNA (228bp) protein (76aa)
Hemin uptake protein hemP n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G443_ALIDK
Hemin uptake protein hemP
Hemin uptake protein hemP {ECO:0000313|EMBL:AEB85187.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8037..8444)
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP3_ALIDB
hypothetical protein
GlcG protein {ECO:0000313|EMBL:GAO21997.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8663..9352
DNA (690bp) protein (230aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP4_ALIDB
hypothetical protein; K06890
Membrane protein {ECO:0000313|EMBL:GAO21996.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9471..9974
DNA (504bp) protein (168aa)
Regulatory protein MarR n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G446_ALIDK
regulatory protein MarR
Regulatory protein MarR {ECO:0000313|EMBL:AEB85190.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9971..11404
DNA (1434bp) protein (478aa)
Major facilitator superfamily MFS_1 n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G447_ALIDK
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:AEB85191.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11458..11841
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRP7_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21993.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11865..12197)
DNA (333bp) protein (111aa)
Small multidrug resistance protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP8_ALIDB
small multidrug resistance protein; K03297 small multidrug resistance protein, SMR family
Small multidrug resistance protein {ECO:0000313|EMBL:AEB85193.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_18
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12413..13003
DNA (591bp) protein (197aa)
Chromate transporter n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP9_ALIDB
chromate transporter; K07240 chromate transporter
Chromate transporter {ECO:0000313|EMBL:AEB85194.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13006..13599
DNA (594bp) protein (198aa)
Chromate transporter n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ0_ALIDB
chromate transporter; K07240 chromate transporter
Chromate transporter {ECO:0000313|EMBL:AEB85195.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13576..14343)
DNA (768bp) protein (256aa)
silent information regulator protein sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
NAD-dependent protein deacylase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRQ1_ALIDB
SCNpilot_expt_300_bf_scaffold_228_curated_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14365..15030)
DNA (666bp) protein (222aa)
Regulatory protein TetR n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ2_ALIDB
TetR family transcriptional regulator
TetR/AcrR family transcriptional regulator {ECO:0000313|EMBL:GAO23020.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15114..15467
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRQ3_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO23019.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15526..15978
DNA (453bp) protein (151aa)
3-demethylubiquinone-9 3-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ5_ALIDB
3-demethylubiquinone-9 3-methyltransferase; K04750 PhnB protein
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:GAO23017.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_24
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16010..16456
DNA (447bp) protein (149aa)
Activator of Hsp90 ATPase 1 family protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ6_ALIDB
activator of hsp90 atpase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:GAO23016.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16498..16983
DNA (486bp) protein (162aa)
3-demethylubiquinone-9 3-methyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ7_ALIDB
3-demethylubiquinone-9 3-methyltransferase
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ADV00271.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCNpilot_expt_300_bf_scaffold_228_curated_26
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17094..17477
DNA (384bp) protein (128aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRQ8_ALIDB
hypothetical protein; K06996
Uncharacterized protein {ECO:0000313|EMBL:AEB85203.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_300_bf_scaffold_228_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17484..17942
DNA (459bp) protein (153aa)
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRQ9_ALIDB
activator of hsp90 atpase 1 family protein
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:GAO23013.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_expt_300_bf_scaffold_228_curated_28
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17949..18695)
DNA (747bp) protein (249aa)
RNA methyltransferase, trmh family, group 3; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TRR0_ALIDB
SCNpilot_expt_300_bf_scaffold_228_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18775..19497)
DNA (723bp) protein (241aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein
Phosphonate-transporting ATPase {ECO:0000313|EMBL:AEB85207.1}; EC=3.6.3.28 {ECO:0000313|EMBL:AEB85207.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Phosphonate-transporting ATPase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G463_ALIDK
SCNpilot_expt_300_bf_scaffold_228_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19516..20169
DNA (654bp) protein (218aa)
arylesterase (EC:3.1.1.2); K10804 acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5]
Arylesterase {ECO:0000313|EMBL:ADV00277.1}; EC=3.1.1.2 {ECO:0000313|EMBL:ADV00277.1};; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Arylesterase n=2 Tax=Alicycliphilus denitrificans RepID=E8TRR3_ALIDB
Displaying items 1-30 of 177 in total

View Taxonomy