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SCNpilot_expt_1000_bf_scaffold_26554_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_26554_curated_1
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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545..1012
DNA (468bp) protein (156aa)
UPI0003CFADD4 related cluster n=1 Tax=unknown RepID=UPI0003CFADD4
Uncharacterized protein {ECO:0000313|EMBL:ESZ03757.1}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_26554_curated_2
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1746..2174)
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4YAS7_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP41969.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCNpilot_expt_1000_bf_scaffold_26554_curated_3
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2220..2525
DNA (306bp) protein (102aa)
Probable DNA repair protein Nham_3906 n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QGQ1_NITHX
hypothetical protein
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_26554_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2616..3011
DNA (396bp) protein (132aa)
Probable DNA repair protein HMPREF9695_00593 n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PIY3_9BRAD
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Ku protein
SCNpilot_expt_1000_bf_scaffold_26554_curated_5
GWA2_OD1_58_9, Kaiserbacteria, Parcubacteria, Bacteria

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3130..3495
DNA (366bp) protein (122aa)
3-methyladenine DNA glycosylase (EC:3.2.2.-); K03652 DNA-3-methyladenine glycosylase [EC:3.2.2.21]
Putative 3-methyladenine DNA glycosylase n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JI09_HYPSM
Uncharacterized protein {ECO:0000313|EMBL:KKW47377.1}; Flags: Fragment;; TaxID=1618672 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Kaiserbacteria) bacterium GW2011_GWA2_58_9.;"
SCNpilot_expt_1000_bf_scaffold_26554_curated_6
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3577..4578
DNA (1002bp) protein (334aa)
ligD; ATP-dependent DNA ligase (EC:6.5.1.1); K01971 DNA ligase (ATP) [EC:6.5.1.1]
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module {ECO:0000313|EMBL:ABQ38247.1}; EC=6.5.1.1 {ECO:0000313|EMBL:ABQ38247.1};; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EQ03_BRASB
SCNpilot_expt_1000_bf_scaffold_26554_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4587..6095
DNA (1509bp) protein (503aa)
ligD; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1]
DNA ligase D n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B6A397_RHILW
DNA ligase D {ECO:0000313|EMBL:ACI58880.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Displaying 7 items

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