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SCNpilot_cont_300_bf_scaffold_87_curated

Search features with annotation key words

Displaying items 181-210 of 1758 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_87_curated_181
R_Betaproteobacteria_65_24, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

183750..185300
DNA (1551bp) protein (517aa)
hypothetical protein n=1 Tax=Azoarcus toluclasticus RepID=UPI00036C557F
UbiD-type (de) carboxylyase-like protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_65_24_curated
SCNpilot_cont_300_bf_scaffold_87_curated_182
unknown

Not on your lists

comp(185378..185641)
DNA (264bp) protein (88aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_183
unknown

Not on your lists

comp(185972..186262)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_184
RLO_Betaproteobacteria_68_20, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(186641..187681)
DNA (1041bp) protein (347aa)
Luciferase-like protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MIF8_9BURK
luciferase-like protein
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_68_20_curated
SCNpilot_cont_300_bf_scaffold_87_curated_185
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

187832..188890
DNA (1059bp) protein (353aa)
Beta-lactamase domain protein n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IDX2_BEII9
beta-lactamase domain-containing protein
Beta-lactamase domain protein {ECO:0000313|EMBL:ACB96904.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_cont_300_bf_scaffold_87_curated_186
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(188899..189618)
DNA (720bp) protein (240aa)
Transcription activator effector binding n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EM15_METSB
transcription activator effector binding protein
Transcription activator effector binding {ECO:0000313|EMBL:ACK50796.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_87_curated_187
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

189822..190691
DNA (870bp) protein (290aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YZ75_9RHIZ
SCNpilot_cont_300_bf_scaffold_87_curated_188
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

190688..191983
DNA (1296bp) protein (432aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HL57_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK58541.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_87_curated_189
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(191980..192693)
DNA (714bp) protein (238aa)
pseudouridine synthase (EC:4.2.1.70); K06177 tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase [EC:5.4.99.28 5.4.99.29]
Pseudouridine synthase n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QGN1_9BRAD
Pseudouridine synthase {ECO:0000313|EMBL:EGP09676.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
SCNpilot_cont_300_bf_scaffold_87_curated_190
bacterium YEK0313, Bacteria

Not on your lists

192721..193845
DNA (1125bp) protein (375aa)
cell division protein FtsY n=1 Tax=Methylocystis parvus RepID=UPI00036512FE
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Signal recognition particle-docking protein FtsY
SCNpilot_cont_300_bf_scaffold_87_curated_191
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

193845..194504
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003117C56
Probable intracellular septation protein A {ECO:0000256|HAMAP-Rule:MF_00189, ECO:0000256|SAAS:SAAS00082307}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
ispZ; intracellular septation protein
SCNpilot_cont_300_bf_scaffold_87_curated_192
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(194675..195265)
DNA (591bp) protein (197aa)
Periplasmic protein thiol/disulphide oxidoreductase DsbE n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ETP0_METSB
protein thiol/disulfide oxidoreductase DsbE; K02199 cytochrome c biogenesis protein CcmG, thiol:disulfide interchange protein DsbE
Periplasmic protein thiol/disulphide oxidoreductase DsbE {ECO:0000313|EMBL:ACK52392.1}; Flags: Precursor;; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_cont_300_bf_scaffold_87_curated_193
unknown

Not on your lists

comp(195262..195414)
DNA (153bp) protein (51aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_194
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(195414..196205)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002DE95A8
Cytochrome c-type biogenesis protein CcmC {ECO:0000313|EMBL:KFC62930.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
heme exporter protein CcmC; K02195 heme exporter protein C
SCNpilot_cont_300_bf_scaffold_87_curated_195
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

196361..197332
DNA (972bp) protein (324aa)
Possible periplasmic substrate-binding protein, ABC-type transporter n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKX4_MOBAS
Possible periplasmic substrate-binding protein, ABC-type transporter {ECO:0000313|EMBL:EAS50399.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
aliphatic sulphonate ABC transporter; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_87_curated_196
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

197469..198422
DNA (954bp) protein (318aa)
Possible periplasmic substrate-binding protein, ABC-type transporter n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YKX4_MOBAS
Possible periplasmic substrate-binding protein, ABC-type transporter {ECO:0000313|EMBL:EAS50399.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
conserved hypothesis ABC transporter periplasmic binding protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_cont_300_bf_scaffold_87_curated_197
Sphingobium indicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

198452..199441
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00037A4144
Protocatechuate 4,5-dioxygenase subunit beta {ECO:0000313|EMBL:EIM67203.1}; TaxID=861109 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium indicum B90A.;"
putative extradiol ring-cleavage dioxygenase
SCNpilot_cont_300_bf_scaffold_87_curated_198
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(199629..200648)
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Burkholderia sp. RPE64 RepID=R4WRN4_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_300_bf_scaffold_87_curated_199
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(200671..201426)
DNA (756bp) protein (252aa)
Ribulose-5-phosphate 4-epimerase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JPV7_AGRRK
Ribulose-5-phosphate 4-epimerase
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_cont_300_bf_scaffold_87_curated_200
R_Betaproteobacteria_63_19, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(201430..202407)
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Baudoinia compniacensis (strain UAMH 10762) RepID=M2NGN3_BAUCO
hypothetical protein
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_63_19_curated
SCNpilot_cont_300_bf_scaffold_87_curated_201
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(202529..203197)
DNA (669bp) protein (223aa)
Heme exporter protein B n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRR3_METTR
heme exporter protein CcmB
Heme exporter protein B {ECO:0000256|PIRNR:PIRNR002764}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_cont_300_bf_scaffold_87_curated_202
bacterium YEK0313, Bacteria

Not on your lists

comp(203194..203892)
DNA (699bp) protein (233aa)
cytochrome c biogenesis protein CcmA; K02193 heme exporter protein A [EC:3.6.3.41]
Heme exporter protein CcmA n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QRR2_METTR
Cytochrome c biogenesis ATP-binding export protein CcmA {ECO:0000313|EMBL:CEJ10870.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_cont_300_bf_scaffold_87_curated_203
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

204038..206767
DNA (2730bp) protein (910aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
aconitate hydratase; K01681 aconitate hydratase 1 [EC:4.2.1.3]
aconitate hydratase n=1 Tax=Methyloferula stellata RepID=UPI00036F15AD
SCNpilot_cont_300_bf_scaffold_87_curated_204
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

206999..208108
DNA (1110bp) protein (370aa)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
leuB; 3-isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Methyloferula stellata RepID=UPI00036C81B1
SCNpilot_cont_300_bf_scaffold_87_curated_205
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

208271..208903
DNA (633bp) protein (211aa)
hypothetical protein n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034504E3
Sel1 domain-containing protein; K07126
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
SCNpilot_cont_300_bf_scaffold_87_curated_206
R_Acidobacteria_61_28, Acidobacteria, Bacteria

Not on your lists

comp(209090..210247)
DNA (1158bp) protein (386aa)
vitamin-B12 independent methionine synthase; K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000360F8D2
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_61_28_curated
SCNpilot_cont_300_bf_scaffold_87_curated_207
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(210413..211447)
DNA (1035bp) protein (345aa)
aspartate-semialdehyde dehydrogenase; K00133 aspartate-semialdehyde dehydrogenase [EC:1.2.1.11]
Aspartate-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; Short=ASA dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121};; Short=ASADH {ECO:0000256|HAMAP-Rule:MF_02121};; EC=1.2.1.11 {ECO:0000256|HAMAP-Rule:MF_02121};; Aspartate-beta-semialdehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_02121}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
aspartate-semialdehyde dehydrogenase n=1 Tax=Methylocystis parvus RepID=UPI0002E002C0
SCNpilot_cont_300_bf_scaffold_87_curated_208
Bosea sp. LC85, Bosea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

211877..212776
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Methylosinus trichosporium OB3b RepID=D5QUV1_METTR
Uncharacterized protein {ECO:0000313|EMBL:KFC63695.1}; TaxID=1502851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bosea.;" source="Bosea sp. LC85.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_87_curated_209
unknown

Not on your lists

212862..213140
DNA (279bp) protein (93aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_87_curated_210
R_Betaproteobacteria_62_17, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(213325..215640)
DNA (2316bp) protein (772aa)
carbon-monoxide dehydrogenase n=1 Tax=Elioraea tepidiphila RepID=UPI00037109C6
cutL; carbon monoxide dehydrogenase
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_62_17_curated
Displaying items 181-210 of 1758 in total

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