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SCNpilot_expt_1000_bf_scaffold_2130_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2130_curated_1
bacterium YEK0313, Bacteria

Not on your lists

comp(1..948)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DLS3_BRAJP
Flavin-dependent monooxygenase, oxygenase subunit HsaA {ECO:0000313|EMBL:CEJ11938.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2130_curated_2
bacterium YEK0313, Bacteria

Not on your lists

1174..1719
DNA (546bp) protein (182aa)
NADPH-dependent FMN reductase; K00299 FMN reductase [EC:1.5.1.38]
FMN reductase, MsuE subfamily n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z4E7_9RHIZ
NAD(P)H-dependent FAD/FMN reductase {ECO:0000313|EMBL:CEJ11937.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_3
bacterium YEK0313, Bacteria

Not on your lists

1730..3010
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DLS5_BRAJP
4,5:9,10-diseco-3-hydroxy-5,9, 17-trioxoandrosta-1(10),2-diene-4-oate hydrolase {ECO:0000313|EMBL:CEJ11936.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2130_curated_4
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3133..4416
DNA (1284bp) protein (428aa)
major facilitator transporter n=1 Tax=Ochrobactrum anthropi RepID=UPI000288A4B7
Major facilitator transporter {ECO:0000313|EMBL:EXL04800.1}; TaxID=529 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi.;"
major facilitator transporter
SCNpilot_expt_1000_bf_scaffold_2130_curated_5
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4517..4825)
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000363277A
Uncharacterized membrane protein {ECO:0000313|EMBL:EGF94867.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2130_curated_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5187..6224)
DNA (1038bp) protein (346aa)
Sensor protein n=1 Tax=Rhizobium sp. RepID=L0NIP6_RHISP
Chemotaxis protein CheY {ECO:0000313|EMBL:KDP72664.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
two component sensor kinase/response regulator hybrid rbh
SCNpilot_expt_1000_bf_scaffold_2130_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6224..7219)
DNA (996bp) protein (332aa)
two component sensor kinase/response regulator hybrid (EC:2.7.3.-)
Two component sensor kinase/response regulator hybrid n=1 Tax=Agrobacterium sp. (strain H13-3) RepID=F0LGP4_AGRSH
Chemotaxis protein CheY {ECO:0000313|EMBL:KDP72664.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7191..8705)
DNA (1515bp) protein (505aa)
non-specific serine/threonine protein kinase (EC:2.7.11.1); K08482 circadian clock protein KaiC
circadian clock protein KaiC n=1 Tax=Rhizobium sp. JGI 0001005-K05 RepID=UPI0003751A5D
Circadian clock protein KaiC {ECO:0000313|EMBL:KDP72663.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9182..9412)
DNA (231bp) protein (77aa)
C4-dicarboxylate transport transcriptional regulatory protein DctD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXU0_9RHIZ
C4-dicarboxylate transport transcriptional regulatory protein DctD {ECO:0000313|EMBL:EYR83938.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
C4-dicarboxylate transport transcriptional regulatory protein
SCNpilot_expt_1000_bf_scaffold_2130_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9409..10506)
DNA (1098bp) protein (366aa)
C4-dicarboxylate transport transcriptional regulatory protein DctD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXU0_9RHIZ
C4-dicarboxylate transport transcriptional regulatory protein DctD {ECO:0000313|EMBL:EYR83938.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
C4-dicarboxylate transport transcriptional regulatory protein DctD
SCNpilot_expt_1000_bf_scaffold_2130_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10503..12344)
DNA (1842bp) protein (614aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
C4-dicarboxylate transport sensor protein DctB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2G2_9RHIZ
C4-dicarboxylate transport sensor protein DctB
SCNpilot_expt_1000_bf_scaffold_2130_curated_12
unknown

Not on your lists

comp(12957..13178)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2130_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13589..13882
DNA (294bp) protein (98aa)
C4-dicarboxylate transport protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTE3_9RHIZ
C4-dicarboxylate transport protein {ECO:0000256|HAMAP-Rule:MF_01300}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
C4-dicarboxylate transporter DctA; K11103 aerobic C4-dicarboxylate transport protein
SCNpilot_expt_1000_bf_scaffold_2130_curated_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14189..14914)
DNA (726bp) protein (242aa)
Transcriptional regulator, TetR family n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GY63_SORC5
Tetracyclin repressor domain-containing protein {ECO:0000313|EMBL:CDN57931.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2130_curated_15
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15010..16872
DNA (1863bp) protein (621aa)
tfdB; 2,4-dichlorophenol 6-monooxygenase (EC:1.14.13.20)
2,4-dichlorophenol 6-monooxygenase {ECO:0000313|EMBL:CAN97191.1}; EC=1.14.13.20 {ECO:0000313|EMBL:CAN97191.1};; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
2,4-dichlorophenol 6-monooxygenase n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9GY62_SORC5
SCNpilot_expt_1000_bf_scaffold_2130_curated_16
unknown

Not on your lists

comp(17002..17310)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2130_curated_17
Brucella ceti, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17307..19487)
DNA (2181bp) protein (727aa)
Uncharacterized protein n=4 Tax=Brucella RepID=N7NYM5_9RHIZ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEH13894.1}; TaxID=595497 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella ceti str. Cudo.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_18
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19587..20246)
DNA (660bp) protein (220aa)
Transcriptional regulator, TetR family n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XWU9_PARAH
transcriptional regulator, TetR family
Transcriptional regulator, TetR family {ECO:0000313|EMBL:AGT09787.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_19
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20274..21431)
DNA (1158bp) protein (386aa)
acyl-CoA dehydrogenase (EC:1.3.8.3)
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:AGT09786.1}; EC=1.3.8.3 {ECO:0000313|EMBL:AGT09786.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Acyl-CoA dehydrogenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YX41_PARAH
SCNpilot_expt_1000_bf_scaffold_2130_curated_20
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21443..22231)
DNA (789bp) protein (263aa)
putative enoyl-CoA hydratase/isomerase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
Enoyl-CoA hydratase-like protein n=6 Tax=Brucella RepID=C9U1K3_BRUPB
Enoyl-CoA hydratase {ECO:0000313|EMBL:EEZ29055.1}; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_21
Brucella sp. F5/99, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22268..23059)
DNA (792bp) protein (264aa)
caiD; carnitinyl-CoA dehydratase (EC:4.2.1.-); K08299 carnitinyl-CoA dehydratase [EC:4.2.1.-]
Crotonobetainyl-CoA-hydratase n=5 Tax=Brucella RepID=C9U1K4_BRUPB
Crotonobetainyl-CoA-hydratase {ECO:0000313|EMBL:EEY24708.1}; TaxID=437701 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella sp. F5/99.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_22
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23061..23858)
DNA (798bp) protein (266aa)
Spermidine/putrescine transport system, permease protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YE72_PARAH
spermidine/putrescine transport system, permease protein
Spermidine/putrescine transport system, permease protein {ECO:0000313|EMBL:AGT09783.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_23
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23868..24794)
DNA (927bp) protein (309aa)
Spermidine/putrescine transport system, permease protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XWU4_PARAH
spermidine/putrescine transport system, permease protein
Spermidine/putrescine transport system, permease protein {ECO:0000313|EMBL:AGT09782.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_24
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24798..25895)
DNA (1098bp) protein (366aa)
spermidine/putrescine transport system, ATP-binding protein (EC:3.6.3.31)
Polyamine-transporting ATPase {ECO:0000256|SAAS:SAAS00083160}; EC=3.6.3.31 {ECO:0000256|SAAS:SAAS00083160};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Spermidine/putrescine transport system, ATP-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5YX35_PARAH
SCNpilot_expt_1000_bf_scaffold_2130_curated_25
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25970..27001)
DNA (1032bp) protein (344aa)
Spermidine/putrescine transport system, substrate-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y215_PARAH
spermidine/putrescine transport system, substrate-binding protein
Spermidine/putrescine transport system, substrate-binding protein {ECO:0000313|EMBL:AGT09780.1}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_26
Achromobacter sp. RTa, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27202..28752
DNA (1551bp) protein (517aa)
hypothetical protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate enzyme domain protein TPP-binding n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WJ79_VEREI
Uncharacterized protein {ECO:0000313|EMBL:KGD89205.1}; TaxID=1532557 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter sp. RTa.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_27
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28817..29410)
DNA (594bp) protein (198aa)
SAM-dependent methyltransferase protein n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S5J8_RHIET
SAM-dependent methyltransferase protein
SAM-dependent methyltransferase protein {ECO:0000313|EMBL:AGS25205.1}; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_28
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29656..31170
DNA (1515bp) protein (505aa)
Peptidase S10 serine carboxypeptidase n=1 Tax=Rhizobium sp. RepID=L0NKW1_RHISP
Carboxypeptidase {ECO:0000313|EMBL:KGE02073.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
peptidase S10 serine carboxypeptidase
SCNpilot_expt_1000_bf_scaffold_2130_curated_29
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31213..32457)
DNA (1245bp) protein (415aa)
hypothetical protein; K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
FAD dependent oxidoreductase n=1 Tax=Nitratireductor indicus C115 RepID=K2NRJ2_9RHIZ
FAD dependent oxidoreductase {ECO:0000313|EMBL:EKF41990.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_2130_curated_30
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32525..33292)
DNA (768bp) protein (256aa)
Putative amino acid uptake ABC transporter periplasmic solute-binding protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NVZ5_9RHIZ
Putative amino acid uptake ABC transporter periplasmic solute-binding protein {ECO:0000313|EMBL:EKF41994.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
amino acid uptake ABC transporter substrate-binding protein precursor
Displaying items 1-30 of 48 in total

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