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SCNpilot_expt_1000_bf_scaffold_1744_curated

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1744_curated_1
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..262)
DNA (261bp) protein (87aa)
ilvH; acetolactate synthase 3 regulatory subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase small subunit n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JXP3_AGRVS
Acetolactate synthase {ECO:0000313|EMBL:KEQ10178.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_2
Rhizobium sp. UR51a, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(344..2122)
DNA (1779bp) protein (593aa)
ilvI; Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS) (EC:2.2.1.6)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591};; TaxID=1604021 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. UR51a.;"
Acetolactate synthase large subunit (AHAS) (Acetohydroxy-acid synthase large subunit) (ALS) n=1 Tax=Rhizobium sp. IRBG74 RepID=U4PVB6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1744_curated_3
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2445..4568
DNA (2124bp) protein (708aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JGK1_AGRRK
hypothetical protein; K06915
Uncharacterized protein {ECO:0000313|EMBL:ACM26975.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_4
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4624..5523)
DNA (900bp) protein (300aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase; K00791 tRNA dimethylallyltransferase [EC:2.5.1.75]
tRNA delta(2)-isopentenylpyrophosphate transferase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000382647F
SCNpilot_expt_1000_bf_scaffold_1744_curated_5
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5525..6415
DNA (891bp) protein (297aa)
serB; phosphoserine phosphatase (EC:3.1.3.3); K01079 phosphoserine phosphatase [EC:3.1.3.3]
Phosphoserine phosphatase SerB n=1 Tax=Rhizobium sp. CF122 RepID=J3BE33_9RHIZ
Phosphoserine phosphatase {ECO:0000313|EMBL:KDP75116.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_6
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6422..7003
DNA (582bp) protein (194aa)
N-acyltransferase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A872_RHIFH
N-acyltransferase
GNAT family acetyltransferase {ECO:0000313|EMBL:KDP75115.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_7
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7014..8570)
DNA (1557bp) protein (519aa)
Putative periplasmic serine protease DO-like {ECO:0000313|EMBL:CCM77043.1}; EC=3.4.21.- {ECO:0000313|EMBL:CCM77043.1};; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
protease Do; K01362 [EC:3.4.21.-]
Putative periplasmic serine protease DO-like n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PT74_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1744_curated_8
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8845..9792)
DNA (948bp) protein (316aa)
putative transmembrane serine protease; K04087 membrane protease subunit HflC [EC:3.4.-.-]
Protein HflC n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MEC1_RHISN
Protein HflC {ECO:0000256|PIRNR:PIRNR005651}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9792..10886)
DNA (1095bp) protein (365aa)
hflK; HFLK protein; K04088 membrane protease subunit HflK [EC:3.4.-.-] rbh
Protein HflK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX97_9RHIZ
Protease FtsH subunit HflK {ECO:0000313|EMBL:EYR81748.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_10
Ochrobactrum sp. EGD-AQ16, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11020..11550)
DNA (531bp) protein (177aa)
Dihydrofolate reductase {ECO:0000256|PIRNR:PIRNR000194}; EC=1.5.1.3 {ECO:0000256|PIRNR:PIRNR000194};; TaxID=1390361 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. EGD-AQ16.;"
folA; dihydrofolate reductase; K00287 dihydrofolate reductase [EC:1.5.1.3]
Dihydrofolate reductase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1XGW9_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1744_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11547..12341)
DNA (795bp) protein (265aa)
Thymidylate synthase {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215270}; Short=TS {ECO:0000256|HAMAP-Rule:MF_00008};; Short=TSase {ECO:0000256|HAMAP-Rule:MF_00008};; EC=2.1.1.45 {ECO:0000256|HAMAP-Rule:MF_00008, ECO:0000256|SAAS:SAAS00215290};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; rad
thyA; thymidylate synthase (EC:2.1.1.45); K00560 thymidylate synthase [EC:2.1.1.45]
thymidylate synthase n=1 Tax=Rhizobium radiobacter RepID=UPI00035C84E3
SCNpilot_expt_1000_bf_scaffold_1744_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12463..12774)
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U8B1_RHIRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ98505.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_13
Rhizobium sp. IRBG74, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13432..13932
DNA (501bp) protein (167aa)
Uncharacterized protein n=1 Tax=Rhizobium lupini HPC(L) RepID=K5C4Z5_RHILU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDI09017.1}; TaxID=424182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. IRBG74.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14142..14417
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J1SZB8_9RHIZ
Arylsulfate sulfotransferase {ECO:0000313|EMBL:KDP75102.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
arylsulfate sulfotransferase
SCNpilot_expt_1000_bf_scaffold_1744_curated_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14411..14950)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U515_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:ENN87704.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1744_curated_16
unknown

Not on your lists

14980..15384
DNA (405bp) protein (135aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1744_curated_17
unknown

Not on your lists

16234..16827
DNA (594bp) protein (198aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1744_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18260..19672)
DNA (1413bp) protein (471aa)
dld; D-lactate dehydrogenase (cytochrome) protein (EC:1.1.2.4); K00102 D-lactate dehydrogenase (cytochrome) [EC:1.1.2.4]
Glycolate oxidase subunit GlcD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXS7_9RHIZ
Glycolate oxidase subunit GlcD {ECO:0000313|EMBL:EYR81739.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_19
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19748..20413)
DNA (666bp) protein (222aa)
cell envelope biogenesis protein OmpA n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000372A81B
Outer membrane protein/peptidoglycan-associated (Lipo)protein {ECO:0000313|EMBL:EJL48956.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
OmpA/MotB family outer membrane protein
SCNpilot_expt_1000_bf_scaffold_1744_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20509..23655)
DNA (3147bp) protein (1049aa)
Cation/multidrug efflux pump n=1 Tax=Rhizobium sp. AP16 RepID=J2CYC0_9RHIZ
Putative efflux pump inner membrane protein {ECO:0000313|EMBL:GAJ90875.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
acriflavin resistance (multidrug efflux transporter) protein; K03296 hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family
SCNpilot_expt_1000_bf_scaffold_1744_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23652..24812)
DNA (1161bp) protein (387aa)
Protein secretion protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JH19_AGRRK
protein secretion protein
Protein secretion protein {ECO:0000313|EMBL:ACM27016.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_22
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25097..25849)
DNA (753bp) protein (251aa)
Putative uncharacterized protein n=1 Tax=Actinomyces sp. oral taxon 175 str. F0384 RepID=F9PN06_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:CDH86131.1}; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_23
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26568..27569
DNA (1002bp) protein (334aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
uvrD; DNA helicase II (EC:3.6.1.-)
DNA/RNA helicase, superfamily I (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2HQ38_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1744_curated_24
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27764..29086)
DNA (1323bp) protein (441aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00035FF6E0
Uncharacterized protein {ECO:0000313|EMBL:EUB96167.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1744_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29703..30023)
DNA (321bp) protein (107aa)
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Rhizobium sp. CF080 RepID=J3CXC8_9RHIZ
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EYR81730.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit
SCNpilot_expt_1000_bf_scaffold_1744_curated_26
unknown

Not on your lists

30223..31167
DNA (945bp) protein (315aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1744_curated_27
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31259..31885
DNA (627bp) protein (209aa)
pncA; nicotinamidase (EC:3.5.1.19)
Pyrazinamidase/nicotinamidase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V1G1_9RHIZ
Pyrazinamidase/nicotinamidase protein {ECO:0000313|EMBL:ENN87715.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_1744_curated_28
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32048..32923
DNA (876bp) protein (292aa)
Pantothenate synthetase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247609}; Short=PS {ECO:0000256|HAMAP-Rule:MF_00158};; EC=6.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247611};; Pantoate--beta-alanine ligase {ECO:0000256|HAMAP-Rule:MF_00158, ECO:0000256|SAAS:SAAS00247610}; Pantoate-activating enzyme {ECO:0000256|HAMAP-Rule:MF_00158}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;"
panC; pantoate--beta-alanine ligase; K01918 pantoate--beta-alanine ligase [EC:6.3.2.1]
Pantothenate synthetase n=1 Tax=Rhizobium sp. AP16 RepID=J2WH90_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1744_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32925..33746
DNA (822bp) protein (274aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725}; EC=2.1.2.11 {ECO:0000256|HAMAP-Rule:MF_00156, ECO:0000256|SAAS:SAAS00094725};; Ketopantoate hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00156}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V3P5_9RHIZ
panB; 3-methyl-2-oxobutanoate hydroxymethyltransferase
SCNpilot_expt_1000_bf_scaffold_1744_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34068..35423
DNA (1356bp) protein (452aa)
Glutamate dehydrogenase/leucine dehydrogenase (EC:1.4.1.4)
NADP-specific glutamate dehydrogenase Gdh n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW77_9RHIZ
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Displaying items 1-30 of 33 in total

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