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SCNpilot_expt_1000_bf_scaffold_1502_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1502_curated_1
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..435)
DNA (435bp) protein (145aa)
Acetyl-CoA acetyltransferase n=1 Tax=Rhizobium sp. CF080 RepID=J2T045_9RHIZ
Thiolase {ECO:0000313|EMBL:CDN56132.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_2
unknown

Not on your lists

603..1316
DNA (714bp) protein (238aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1502_curated_3
unknown

Not on your lists

1306..1524
DNA (219bp) protein (73aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1502_curated_4
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2201..3088
DNA (888bp) protein (296aa)
Transcriptional regulator, LysR family n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LM47_RALME
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABF08779.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
SCNpilot_expt_1000_bf_scaffold_1502_curated_5
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3269..4780
DNA (1512bp) protein (504aa)
aldehyde dehydrogenase (EC:1.2.1.3); K00146 phenylacetaldehyde dehydrogenase [EC:1.2.1.39]
Probable aldehyde dehydrogenase n=1 Tax=Sagittula stellata E-37 RepID=A3K7U6_9RHOB
Probable aldehyde dehydrogenase {ECO:0000313|EMBL:EBA06718.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
SCNpilot_expt_1000_bf_scaffold_1502_curated_6
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4802..5287)
DNA (486bp) protein (162aa)
Transcriptional regulator, MarR family n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LLB9_RUEPO
Uncharacterized protein {ECO:0000313|EMBL:KGF69430.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1502_curated_7
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5274..5792)
DNA (519bp) protein (173aa)
Transcriptional regulator, MarR family protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7T9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGF69431.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1502_curated_8
Leisingera sp. ANG-Vp, Leisingera, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5831..6319)
DNA (489bp) protein (163aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LLB7_RUEPO
Uncharacterized protein {ECO:0000313|EMBL:KIC21441.1}; TaxID=1577896 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Leisingera.;" source="Leisingera sp. ANG-Vp.;"
SCNpilot_expt_1000_bf_scaffold_1502_curated_9
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6316..7881)
DNA (1566bp) protein (522aa)
Indolepyruvate oxidoreductase subunit B {ECO:0000313|EMBL:KGF69432.1}; EC=1.2.7.8 {ECO:0000313|EMBL:KGF69432.1};; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
indolepyruvate oxidoreductase subunit B (EC:1.2.7.8); K00180 indolepyruvate ferredoxin oxidoreductase, beta subunit [EC:1.2.7.8]
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Sagittula stellata E-37 RepID=A3K7T7_9RHOB
SCNpilot_expt_1000_bf_scaffold_1502_curated_10
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7883..10036)
DNA (2154bp) protein (718aa)
indolepyruvate oxidoreductase, IorA subunit; K00179 indolepyruvate ferredoxin oxidoreductase, alpha subunit [EC:1.2.7.8]
Indolepyruvate oxidoreductase, IorA subunit, putative n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LLB5_RUEPO
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:KGF69433.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
SCNpilot_expt_1000_bf_scaffold_1502_curated_11
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10171..10791)
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7U5_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EBA06717.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_12
unknown

Not on your lists

comp(11429..12397)
DNA (969bp) protein (323aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1502_curated_13
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13079..14095
DNA (1017bp) protein (339aa)
ABC transporter, permease protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7U3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:KGF69416.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_14
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14092..14949
DNA (858bp) protein (286aa)
ABC transporter, permease protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7U2_9RHOB
ABC transporter permease {ECO:0000313|EMBL:KGF69417.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
binding-protein-dependent transport systems inner membrane component
SCNpilot_expt_1000_bf_scaffold_1502_curated_15
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14953..16794
DNA (1842bp) protein (614aa)
Putative ABC transporter ATP-binding protein n=1 Tax=Sagittula stellata E-37 RepID=A3K7U1_9RHOB
Putative ABC transporter ATP-binding protein {ECO:0000313|EMBL:EBA06713.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
oligopeptide/dipeptide ABC transporter ATPase
SCNpilot_expt_1000_bf_scaffold_1502_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17002..17895)
DNA (894bp) protein (298aa)
Stage II sporulation protein E n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUK9_9RHIZ
Stage II sporulation protein E {ECO:0000313|EMBL:EYR84004.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
protein serine/threonine phosphatase
SCNpilot_expt_1000_bf_scaffold_1502_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18123..18647
DNA (525bp) protein (175aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ65_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84003.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_18
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18641..19816
DNA (1176bp) protein (392aa)
ubiE2; ubiquinone/menaquinone biosynthesis methyltransferase UbiE (EC:2.1.1.-)
Putative methyltransferase protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NU86_9RHOB
Putative methyltransferase protein {ECO:0000313|EMBL:EAV43488.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
SCNpilot_expt_1000_bf_scaffold_1502_curated_19
Labrenzia aggregata, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19813..22194
DNA (2382bp) protein (794aa)
Uncharacterized protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NU87_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAV43489.1}; TaxID=384765 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia aggregata (strain ATCC 25650 / DSM 13394 / JCM 20685 / NBRC; 16684 / NCIMB 2208 / IAM 12614) (Stappia aggregata).;"
sigB; sigma factor SigB regulation protein rsbU
SCNpilot_expt_1000_bf_scaffold_1502_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22197..22745
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ES48_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84000.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22787..23125
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CUL4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83999.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23095..23892)
DNA (798bp) protein (266aa)
Protein kinase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ69_9RHIZ
Protein kinase domain-containing protein {ECO:0000313|EMBL:EYR83998.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
serine/threonine protein kinase
SCNpilot_expt_1000_bf_scaffold_1502_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23908..25437)
DNA (1530bp) protein (510aa)
Methylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ40_9RHIZ
Methylase {ECO:0000313|EMBL:EYR83997.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methylase
SCNpilot_expt_1000_bf_scaffold_1502_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25461..26552)
DNA (1092bp) protein (364aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000366F85F
Type VI secretion protein, VC_A0111 family {ECO:0000313|EMBL:EYR83996.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11895 type VI secretion system protein ImpH
SCNpilot_expt_1000_bf_scaffold_1502_curated_25
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26516..27139)
DNA (624bp) protein (208aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWX7_9RHIZ
Type VI secretion protein, VC_A0110 family {ECO:0000313|EMBL:EYR83995.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11896 type VI secretion system protein ImpG
SCNpilot_expt_1000_bf_scaffold_1502_curated_26
unknown

Not on your lists

28035..28241
DNA (207bp) protein (69aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1502_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28298..29806)
DNA (1509bp) protein (503aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI0003817D21
Type VI secretion protein IcmF {ECO:0000313|EMBL:EYR83994.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
icmF; Type VI secretion protein IcmF; K11891 type VI secretion system protein ImpL
SCNpilot_expt_1000_bf_scaffold_1502_curated_28
unknown

Not on your lists

29944..31182
DNA (1239bp) protein (413aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1502_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31773..33557)
DNA (1785bp) protein (595aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000371E5AA
Uncharacterized protein {ECO:0000313|EMBL:EYR83993.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33554..34894)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEL4_9RHIZ
Type IV / VI secretion system protein, DotU family {ECO:0000313|EMBL:EYR83992.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11892 type VI secretion system protein ImpK
Displaying items 1-30 of 44 in total

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