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SCNpilot_expt_1000_bf_scaffold_1502_curated

Search features with annotation key words

Displaying items 31-44 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1502_curated_31
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35048..36376)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C9A3D
Type VI secretion protein, VC_A0114 family {ECO:0000313|EMBL:EYR83991.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11893 type VI secretion system protein ImpJ
SCNpilot_expt_1000_bf_scaffold_1502_curated_32
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36535..37077)
DNA (543bp) protein (181aa)
Type VI secretion lipoprotein, VC_A0113 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDC8_9RHIZ
Type VI secretion lipoprotein, VC_A0113 family {ECO:0000313|EMBL:EYR83990.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_33
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37068..37766)
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMQ0_9RHIZ
FHA domain-containing protein {ECO:0000313|EMBL:EYR83989.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
fha1; type VI secretion protein Fha1
SCNpilot_expt_1000_bf_scaffold_1502_curated_34
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(37875..38939)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00037228F1
Methyltransferase domain-containing protein {ECO:0000313|EMBL:EYR83988.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_35
unknown

Not on your lists

39092..39199
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1502_curated_36
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(39324..40352)
DNA (1029bp) protein (343aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI000372A1D3
Anti-sigma regulatory factor (Ser/Thr protein kinase) {ECO:0000313|EMBL:EYR83986.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RsbW; anti-sigma regulatory factor
SCNpilot_expt_1000_bf_scaffold_1502_curated_37
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40482..40811
DNA (330bp) protein (110aa)
Anti-anti-sigma factor n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFR6_9RHIZ
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
anti-anti-sigma factor
SCNpilot_expt_1000_bf_scaffold_1502_curated_38
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40961..42322
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_1502_curated_39
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

42319..43680
DNA (1362bp) protein (454aa)
hypothetical protein n=1 Tax=Aureimonas ureilytica RepID=UPI00036C21AD
Type VI secretion ATPase, ClpV1 family {ECO:0000313|EMBL:EYR83984.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
clpB3; ATP-dependent chaperone; type VI secretion associated protein; K11907 type VI secretion system protein VasG
SCNpilot_expt_1000_bf_scaffold_1502_curated_40
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43749..44225
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z4J8_AZOL4
hypothetical protein; K11903 type VI secretion system secreted protein Hcp
Uncharacterized protein {ECO:0000313|EMBL:CBS86350.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_1502_curated_41
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44283..46322
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83982.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_42
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46336..46980
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83981.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1502_curated_43
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

47181..48311
DNA (1131bp) protein (377aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTW3_9RHIZ
Type VI secretion-associated protein, ImpA family {ECO:0000313|EMBL:EYR83980.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11902 type VI secretion system protein ImpA
SCNpilot_expt_1000_bf_scaffold_1502_curated_44
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48376..48846
DNA (471bp) protein (157aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYG0_9RHIZ
Type VI secretion protein, VC_A0107 family {ECO:0000313|EMBL:EYR83979.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11901 type VI secretion system protein ImpB
Displaying items 31-44 of 44 in total

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