ggKbase home page

SCNpilot_expt_1000_bf_scaffold_2486_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2486_curated_1
unknown

Not on your lists

comp(9..134)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2486_curated_2
Brevundimonas sp. BAL3, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(476..793)
DNA (318bp) protein (106aa)
Transcriptional regulator, ArsR family protein n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WAC9_9CAUL
Transcriptional regulator, ArsR family protein {ECO:0000313|EMBL:EDX81239.1}; TaxID=391600 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. BAL3.;"
regulatory protein, ArsR
SCNpilot_expt_1000_bf_scaffold_2486_curated_3
unknown

Not on your lists

859..993
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2486_curated_4
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

990..1196
DNA (207bp) protein (69aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
alkylhydroperoxidase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00031ABC3B
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2486_curated_5
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1242..2150
DNA (909bp) protein (303aa)
Transcriptional regulator, LysR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LP58_RHITR
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGB72501.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2486_curated_6
unknown

Not on your lists

comp(2444..2647)
DNA (204bp) protein (68aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2486_curated_7
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3692..4684
DNA (993bp) protein (331aa)
Probable spermidine/putrescine ABC transporter, ATP-binding protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q0S8_RHIE6
ABC transporter ATP-binding protein {ECO:0000313|EMBL:KEC74661.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
spermidine/putrescine ABC transporter ATP-binding protein; K02052 putative spermidine/putrescine transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2486_curated_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5626..6435
DNA (810bp) protein (270aa)
spermidine/putrescine ABC transporter permease n=1 Tax=Rhizobium gallicum RepID=UPI0003789D0B
Spermidine/putrescine ABC transporter permease protein {ECO:0000313|EMBL:AJC81198.1}; TaxID=1432049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. phaseoli str. IE4803.;"
spermidine/putrescine ABC transporter permease; K02053 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2486_curated_9
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6453..7880
DNA (1428bp) protein (476aa)
gamma-aminobutyraldehyde dehydrogenase; K00137 aminobutyraldehyde dehydrogenase [EC:1.2.1.19]
NAD-dependent aldehyde dehydrogenase n=1 Tax=Rhizobium sp. AP16 RepID=J2WAH5_9RHIZ
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:EJK79595.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_2486_curated_10
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7888..8733)
DNA (846bp) protein (282aa)
PREDICTED: uncharacterized membrane protein in ycf23-apcF intergenic region-like n=1 Tax=Pantholops hodgsonii RepID=UPI0003C1AE5B
Manganese ABC transporter permease protein {ECO:0000313|EMBL:GAK68696.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
yfeD; Chelated iron transport system membrane protein YfeD
SCNpilot_expt_1000_bf_scaffold_2486_curated_11
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8730..9587)
DNA (858bp) protein (286aa)
Chelated iron transport system membrane protein yfeC n=1 Tax=Rhizobium sp. RepID=L0NI49_RHISP
Manganese ABC transporter permease protein {ECO:0000313|EMBL:GAK68697.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
sitC; iron ABC transporter permease; K11605 manganese/iron transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2486_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9571..10452)
DNA (882bp) protein (294aa)
Iron ABC transporter, nucleotide binding/ATPase protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XUX1_RHIRD
Iron ABC transporter, nucleotide binding/ATPase protein {ECO:0000313|EMBL:EHH05931.1}; TaxID=1082932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens CCNWGS0286.;"
sitB; iron ABC transporter ATPase; K11607 manganese/iron transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2486_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10449..11339)
DNA (891bp) protein (297aa)
Iron ABC transporter substrate binding protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HC81_RHIRD
Strain MEJ076 contig_9, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03112.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
iron ABC transporter substrate binding protein; K11604 manganese/iron transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2486_curated_14
unknown

Not on your lists

11577..11810
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2486_curated_15
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11818..12780
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JST3_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM37776.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_2486_curated_16
unknown

Not on your lists

comp(12747..12911)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2486_curated_17
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13010..14506)
DNA (1497bp) protein (499aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
lysS; lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
Lysine--tRNA ligase n=1 Tax=Rhizobium sp. CF142 RepID=J2B003_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2486_curated_18
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14634..16088)
DNA (1455bp) protein (485aa)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17]
Glutamate--tRNA ligase n=1 Tax=Rhizobium sp. AP16 RepID=J2W9X2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2486_curated_19
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16278..18050)
DNA (1773bp) protein (591aa)
Di-/tricarboxylate transporter n=1 Tax=Rhizobium sp. CF080 RepID=J2H763_9RHIZ
Citrate transporter {ECO:0000313|EMBL:EUB97995.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
Di- and tricarboxylate transporter protein
SCNpilot_expt_1000_bf_scaffold_2486_curated_20
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18389..19132)
DNA (744bp) protein (248aa)
Integral membrane protein TerC n=8 Tax=Rhizobium meliloti RepID=F6BNB7_SINMB
Membrane protein TerC, possibly involved in tellurium resistance
Integral membrane protein TerC {ECO:0000313|EMBL:AEG05628.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_2486_curated_21
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19279..19956)
DNA (678bp) protein (226aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF080 RepID=J2H769_9RHIZ
TetR family transcriptional regulator {ECO:0000313|EMBL:KGD91960.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2486_curated_22
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20088..21308
DNA (1221bp) protein (407aa)
HlyD secretion protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5MPK2_9RHIZ
HlyD secretion protein {ECO:0000313|EMBL:EJT03910.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
HlyD secretion protein; K03543 multidrug resistance protein A
SCNpilot_expt_1000_bf_scaffold_2486_curated_23
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21351..21845
DNA (495bp) protein (165aa)
MFS transporter n=1 Tax=Rhizobium giardinii RepID=UPI000365F085
MFS transporter {ECO:0000313|EMBL:KDP76713.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
EmrB/QacA subfamily drug resistance transporter
Displaying 23 items

View Taxonomy