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SCNpilot_expt_1000_bf_scaffold_1493_curated

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1493_curated_1
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..152)
DNA (150bp) protein (50aa)
Response regulator protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q281_9RHIZ
Response regulator protein {ECO:0000313|EMBL:EKF57804.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(368..946)
DNA (579bp) protein (193aa)
Two component sensor kinase/response regulator hybrid n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYL0_9RHIZ
Signal transduction histidine kinase {ECO:0000313|EMBL:EYR78522.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two component sensor kinase/response regulator hybrid
SCNpilot_expt_1000_bf_scaffold_1493_curated_3
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1485..1937
DNA (453bp) protein (151aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP46142.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_4
unknown

Not on your lists

2331..2636
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1493_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2573..3088)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q9Z2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78521.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_6
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3652..5577
DNA (1926bp) protein (642aa)
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CX89_AGRT5
Chemotaxis protein {ECO:0000313|EMBL:KGE82917.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
mcpA; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_7
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5659..5964)
DNA (306bp) protein (102aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4Q6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EHS52277.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_8
Mesorhizobium sp. LSJC269B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6070..6519)
DNA (450bp) protein (150aa)
UPI0003CEE2CE related cluster n=1 Tax=unknown RepID=UPI0003CEE2CE
Uncharacterized protein {ECO:0000313|EMBL:ESW84883.1}; TaxID=1287326 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC269B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6889..7710
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C37C4
UspA domain-containing protein {ECO:0000313|EMBL:CDX29260.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_10
Mesorhizobium sp. L103C120A0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7779..10250
DNA (2472bp) protein (824aa)
Mg2+ transport ATPase; K01531 Mg2+-importing ATPase [EC:3.6.3.2] rbh
Magnesium transporter n=1 Tax=Mesorhizobium sp. L103C120A0 RepID=V7HC55_9RHIZ
Magnesium transporter {ECO:0000313|EMBL:ESZ54045.1}; TaxID=1287086 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C120A0.;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10476..11306
DNA (831bp) protein (277aa)
universal stress protein UspA n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI000373AEB2
Universal stress protein UspA {ECO:0000313|EMBL:EYR82607.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11579..13846
DNA (2268bp) protein (756aa)
formate dehydrogenase alpha chain protein; K00123 formate dehydrogenase, alpha subunit [EC:1.2.1.2]
Formate dehydrogenase alpha chain protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP26_AGRRK
Formate dehydrogenase alpha chain protein {ECO:0000313|EMBL:ACM29306.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_13
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13934..14503)
DNA (570bp) protein (190aa)
Mechanosensitive ion channel protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP32_AGRRK
mechanosensitive ion channel protein
Mechanosensitive ion channel protein {ECO:0000313|EMBL:ACM29312.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_14
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14837..16714
DNA (1878bp) protein (626aa)
Chaperone protein DnaK n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP34_AGRRK
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dnaK; chaperone protein (Heat shock protein 70); K04043 molecular chaperone DnaK
SCNpilot_expt_1000_bf_scaffold_1493_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16821..17723
DNA (903bp) protein (301aa)
Curved DNA-binding protein CbpA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CNW4_9RHIZ
Curved DNA-binding protein CbpA {ECO:0000313|EMBL:EYR84576.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dnaJ; DNAJ molecular chaperone protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17727..18008
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTP0_9RHIZ
MerR HTH family regulatory protein {ECO:0000313|EMBL:EYR84577.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_17
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18040..19425
DNA (1386bp) protein (462aa)
Two-component response regulator protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP38_AGRRK
Fis family transcriptional regulator {ECO:0000313|EMBL:KEA08339.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
two-component response regulator protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_18
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19418..21451
DNA (2034bp) protein (678aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
Two-component sensor histidine kinase/response regulator hybrid protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP39_AGRRK
two-component sensor histidine kinase/response regulator hybrid protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_19
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21612..24221
DNA (2610bp) protein (870aa)
ATP-dependent Clp protease n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP40_AGRRK
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
clpB; ATP-dependent Clp protease; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB
SCNpilot_expt_1000_bf_scaffold_1493_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24249..24503
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP41_AGRRK
Uncharacterized protein {ECO:0000313|EMBL:EYR84578.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_21
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24568..24762
DNA (195bp) protein (65aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0002DDB4B3
Bradyrhizobium elkanii strain UASWS1015 Contig173, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49555.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24812..25156
DNA (345bp) protein (115aa)
Iron-dependent peroxidase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP43_AGRRK
Dyp-type peroxidase family {ECO:0000313|EMBL:EYR84579.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
iron-dependent peroxidase; K07223 putative iron-dependent peroxidase
SCNpilot_expt_1000_bf_scaffold_1493_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25153..25848
DNA (696bp) protein (232aa)
Iron-dependent peroxidase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP43_AGRRK
Dyp-type peroxidase family {ECO:0000313|EMBL:EYR84579.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
iron-dependent peroxidase; K07223 putative iron-dependent peroxidase
SCNpilot_expt_1000_bf_scaffold_1493_curated_24
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26007..26627
DNA (621bp) protein (207aa)
Linocin-M18 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHD5_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84580.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Linocin_M18 bacteriocin protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_25
Afipia clevelandensis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26647..27930
DNA (1284bp) protein (428aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase; K03885 NADH dehydrogenase [EC:1.6.99.3]
Uncharacterized protein n=1 Tax=Afipia clevelandensis ATCC 49720 RepID=K8P8H0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS35940.1}; TaxID=883079 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia clevelandensis ATCC 49720.;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_26
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27927..28157
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HU33_PSEUO
Uncharacterized protein {ECO:0000313|EMBL:KES20132.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1493_curated_27
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28154..28546
DNA (393bp) protein (131aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CH79_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84582.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28581..30062
DNA (1482bp) protein (494aa)
putative Cardiolipin synthetase (Cardiolipin synthase) (CL synthase) cls (EC:2.7.8.-)
Putative Cardiolipin synthetase (Cardiolipin synthase) (CL synthase) cls n=1 Tax=Thiomonas arsenitoxydans (strain DSM 22701 / CIP 110005 / 3As) RepID=D6CVK7_THIA3
Cardiolipin synthase {ECO:0000313|EMBL:EYR84583.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_1493_curated_29
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30320..31603
DNA (1284bp) protein (428aa)
Methionine gamma-lyase MdeA {ECO:0000313|EMBL:EYR83934.1}; EC=4.4.1.11 {ECO:0000313|EMBL:EYR83934.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
methionine gamma-lyase (EC:2.5.1.48); K01761 methionine-gamma-lyase [EC:4.4.1.11]
Methionine gamma-lyase MdeA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV17_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1493_curated_30
unknown

Not on your lists

32168..32359
DNA (192bp) protein (64aa)

This feature has no annotations

Displaying items 1-30 of 34 in total

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