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SCNpilot_expt_1000_bf_scaffold_770_curated

Search features with annotation key words

Displaying items 1-30 of 75 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_770_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..188)
DNA (186bp) protein (62aa)
Dihydroorotase {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440}; Short=DHOase {ECO:0000256|HAMAP-Rule:MF_00219};; EC=3.5.2.3 {ECO:0000256|HAMAP-Rule:MF_00219, ECO:0000256|RuleBase:RU003440};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dihydroorotase n=1 Tax=Rhizobium giardinii RepID=UPI00035FA812
dihydroorotase, homodimeric type
SCNpilot_expt_1000_bf_scaffold_770_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(270..893)
DNA (624bp) protein (208aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00038123EF
Strain MEJ076 contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ04541.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
frcK; putative fructose transport system kinase
SCNpilot_expt_1000_bf_scaffold_770_curated_3
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(896..1678)
DNA (783bp) protein (261aa)
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI00036B4970
ABC transporter related protein {ECO:0000313|EMBL:EHS49236.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
frcA; ABC transporter nucleotide binding/ATPase (sugar); K10554 fructose transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_770_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1678..2760)
DNA (1083bp) protein (361aa)
ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI00037FCFED
Ribose transport system permease protein RbsC {ECO:0000313|EMBL:EYR84048.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Permease component of ribose/xylose/arabinose/galactoside ABC-type transporter
SCNpilot_expt_1000_bf_scaffold_770_curated_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2964..3989)
DNA (1026bp) protein (342aa)
Periplasmic binding protein/LacI transcriptional regulator n=8 Tax=Rhizobium meliloti RepID=F6BPS8_SINMB
frcB; FrcB; K10552 fructose transport system substrate-binding protein
Putative fructose ABC-type transport system,periplasmic component {ECO:0000313|EMBL:AGG73057.1}; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
SCNpilot_expt_1000_bf_scaffold_770_curated_6
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4234..5484
DNA (1251bp) protein (417aa)
ROK family transcriptional regulator n=1 Tax=Rhizobium leguminosarum RepID=UPI00037DF3A9
ROK family transcriptional regulator {ECO:0000313|EMBL:EJZ22313.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
ROK family transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_770_curated_7
unknown

Not on your lists

5607..5834
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_770_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5968..6672
DNA (705bp) protein (235aa)
Crp/Fnr family transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00037E69B8
Putative cAMP-binding protein-catabolite activator {ECO:0000313|EMBL:EYR83224.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Putative cAMP-binding protein-catabolite gene activator
SCNpilot_expt_1000_bf_scaffold_770_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6688..8568
DNA (1881bp) protein (627aa)
Adenylate cyclase 1 {ECO:0000313|EMBL:EYR83225.1}; EC=4.6.1.1 {ECO:0000313|EMBL:EYR83225.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Adenylate cyclase 1 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRP2_9RHIZ
adenylate/guanylate cyclase with Chase sensor
SCNpilot_expt_1000_bf_scaffold_770_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8569..9207)
DNA (639bp) protein (213aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWD2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83226.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
FecR protein
SCNpilot_expt_1000_bf_scaffold_770_curated_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9389..10330
DNA (942bp) protein (314aa)
Sel1 repeat protein n=1 Tax=Rhizobium sp. CF080 RepID=J2II17_9RHIZ
Sel1 repeat protein {ECO:0000313|EMBL:CDN46277.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein; K07126
SCNpilot_expt_1000_bf_scaffold_770_curated_12
unknown

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10690..11289
DNA (600bp) protein (200aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_770_curated_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11294..12016)
DNA (723bp) protein (241aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FD05_9RHIZ
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:EHS49231.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
Fnr-like transcriptional activator
SCNpilot_expt_1000_bf_scaffold_770_curated_14
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12115..13167)
DNA (1053bp) protein (351aa)
Proline racemase n=1 Tax=Rhizobium sp. AP16 RepID=J2WJJ5_9RHIZ
Proline racemase {ECO:0000313|EMBL:EJK82865.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
proline racemase
SCNpilot_expt_1000_bf_scaffold_770_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13230..14480)
DNA (1251bp) protein (417aa)
D-amino-acid dehydrogenase (EC:1.4.99.1); K00285 D-amino-acid dehydrogenase [EC:1.4.99.1]
D-amino-acid dehydrogenase {ECO:0000313|EMBL:ACS54427.1}; EC=1.4.99.1 {ECO:0000313|EMBL:ACS54427.1};; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
D-amino-acid dehydrogenase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6AZA1_RHILS
SCNpilot_expt_1000_bf_scaffold_770_curated_16
Mesorhizobium sp. L2C084A000, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14477..15493)
DNA (1017bp) protein (339aa)
urea amidolyase related protein (EC:6.3.4.6)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036453F5
Uncharacterized protein {ECO:0000313|EMBL:ESZ28654.1}; TaxID=1287116 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L2C084A000.;"
SCNpilot_expt_1000_bf_scaffold_770_curated_17
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15490..16125)
DNA (636bp) protein (212aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036F65F1
Putative hydrolase subunit {ECO:0000313|EMBL:CDX56539.1}; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
Allophanate hydrolase subunit 1
SCNpilot_expt_1000_bf_scaffold_770_curated_18
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16312..17073
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003811004
UPF0271 protein N234_29075 {ECO:0000256|HAMAP-Rule:MF_00691}; TaxID=1366050 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii DTP0602.;"
LamB/YcsF family protein; K07160 UPF0271 protein
SCNpilot_expt_1000_bf_scaffold_770_curated_19
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17088..17540
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00036A60F3
Uncharacterized protein {ECO:0000313|EMBL:KJK26088.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
acetyl-CoA carboxylase, biotin carboxyl carrier protein; K02160 acetyl-CoA carboxylase biotin carboxyl carrier protein
SCNpilot_expt_1000_bf_scaffold_770_curated_20
Mesorhizobium plurifarium, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17544..18902
DNA (1359bp) protein (453aa)
Acetyl-CoA carboxylase, biotin carboxylase subunit {ECO:0000313|EMBL:CDX32569.1}; EC=6.3.4.14 {ECO:0000313|EMBL:CDX32569.1};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;"
acetyl-CoA carboxylase, biotin carboxylase (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
Acetyl-CoA carboxylase biotin carboxylase subunit n=1 Tax=Ralstonia pickettii DTP0602 RepID=U3QSQ2_RALPI
SCNpilot_expt_1000_bf_scaffold_770_curated_21

Not on your lists

18899..19282
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K5U2_AGRVS
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48577.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_770_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19245..20630)
DNA (1386bp) protein (462aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8AEX1_RHIRD
Uncharacterized protein {ECO:0000313|EMBL:CDN91827.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_770_curated_23
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21003..21575
DNA (573bp) protein (191aa)
Putative transcriptional regulator n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q2I5_9RHIZ
Putative transcriptional regulator {ECO:0000313|EMBL:CCM76709.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
putative transcriptional regulator protein
SCNpilot_expt_1000_bf_scaffold_770_curated_24
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21581..23347
DNA (1767bp) protein (589aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E55B5A
putative cytochrome bc biosynthesis ABC transporter ATP-binding protein; K16013 ATP-binding cassette, subfamily C, bacterial CydD
Putative ABC transporter involved in cytochrome bd biosynthesis, ATP-binding protein {ECO:0000313|EMBL:ACE94258.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_770_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23347..25032
DNA (1686bp) protein (562aa)
ABC transporter ATP-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00036822BF
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AHF88771.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
cysteine ABC transporter ATP-binding protein/permease; K16012 ATP-binding cassette, subfamily C, bacterial CydC
SCNpilot_expt_1000_bf_scaffold_770_curated_26
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25107..26687
DNA (1581bp) protein (527aa)
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome bd ubiquinol oxidase subunit I n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6B9K2_RHILS
Cytochrome bd ubiquinol oxidase subunit I {ECO:0000313|EMBL:ACS60874.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_770_curated_27
Rhizobium sp. Pop5, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26694..27848
DNA (1155bp) protein (385aa)
cydB; cytochrome bd ubiquinol oxidase subunit II (EC:1.10.3.-); K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-]
Cytochrome d ubiquinol oxidase, subunit II n=1 Tax=Rhizobium sp. Pop5 RepID=K0W9A8_9RHIZ
Cytochrome d ubiquinol oxidase, subunit II {ECO:0000313|EMBL:EJZ20164.1}; TaxID=1223565 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. Pop5.;"
SCNpilot_expt_1000_bf_scaffold_770_curated_28
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27863..27985
DNA (123bp) protein (41aa)
Cyd operon protein YbgT n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DHC5_9RHIZ
Cyd operon protein YbgT {ECO:0000313|EMBL:EJT01054.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
cyd operon protein YbgT
SCNpilot_expt_1000_bf_scaffold_770_curated_29
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27995..28807)
DNA (813bp) protein (271aa)
Transcriptional regulator protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UTU6_9RHIZ
Transcriptional regulator protein {ECO:0000313|EMBL:ENN85090.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
transcriptional regulator, AraC family
SCNpilot_expt_1000_bf_scaffold_770_curated_30
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28927..30120
DNA (1194bp) protein (398aa)
Major facilitator superfamily MFS_1 n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DHA4_9RHIZ
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:EJT01029.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
major facilitator superfamily protein; K08223 MFS transporter, FSR family, fosmidomycin resistance protein
Displaying items 1-30 of 75 in total

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