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SCNpilot_expt_1000_bf_scaffold_7011_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7011_curated_1
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1514)
DNA (1512bp) protein (504aa)
Transcription termination factor NusA n=1 Tax=Rhizobium sp. CF142 RepID=J2B424_9RHIZ
nusA; transcription elongation factor NusA; K02600 N utilization substance protein A
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
SCNpilot_expt_1000_bf_scaffold_7011_curated_2
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1562..2167)
DNA (606bp) protein (202aa)
Ribosome maturation factor RimP n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q614_9RHIZ
Ribosome maturation factor RimP {ECO:0000256|HAMAP-Rule:MF_01077, ECO:0000256|SAAS:SAAS00001667}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_7011_curated_3
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2401..3639)
DNA (1239bp) protein (413aa)
Membrane-bound lytic murein transglycosylase B n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIT6_9RHIZ
Lytic murein transglycosylase {ECO:0000313|EMBL:EUC00750.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
putative lytic murein transglycosylase
SCNpilot_expt_1000_bf_scaffold_7011_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3652..4257)
DNA (606bp) protein (202aa)
Recombination protein RecR n=2 Tax=Rhizobium/Agrobacterium group RepID=RECR_AGRRK rbh
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
recR; recombination protein RecR; K06187 recombination protein RecR
SCNpilot_expt_1000_bf_scaffold_7011_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4316..4927
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae WSM1455 RepID=J0V6P7_RHILV
Uncharacterized protein {ECO:0000313|EMBL:EJC68846.1}; TaxID=755176 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae WSM1455.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7011_curated_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4928..5539)
DNA (612bp) protein (204aa)
lysine transporter LysE n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003738D8C
Lysine transporter LysE {ECO:0000313|EMBL:KGD98192.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
amino acid efflux transmembrane protein
SCNpilot_expt_1000_bf_scaffold_7011_curated_7
Agrobacterium arsenijevicii, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5597..5920)
DNA (324bp) protein (108aa)
Nucleoid-associated protein Agau_C101133 n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U3M2_RHIRD
Nucleoid-associated protein RP75_02005 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1585697 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. KFB 330.;"
hypothetical protein; K09747 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7011_curated_8
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5942..6916)
DNA (975bp) protein (325aa)
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:KEA07950.1}; EC=2.7.7.7 {ECO:0000313|EMBL:KEA07950.1};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
dnaX; DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunit gamma/tau n=1 Tax=Rhizobium sp. AP16 RepID=J2WWW4_9RHIZ
SCNpilot_expt_1000_bf_scaffold_7011_curated_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6913..7407)
DNA (495bp) protein (165aa)
dnaX; DNA polymerase III subunits gamma and tau; K02343 DNA polymerase III subunit gamma/tau [EC:2.7.7.7]
DNA polymerase III, subunit gamma/tau n=1 Tax=Rhizobium sp. AP16 RepID=J2WWW4_9RHIZ
DNA polymerase III gamma/tau subunit {ECO:0000313|EMBL:GAJ96423.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
Displaying 9 items

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