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SCNpilot_expt_1000_bf_scaffold_2444_curated

Search features with annotation key words

Displaying items 1-30 of 72 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2444_curated_1
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1125
DNA (1125bp) protein (375aa)
glgC; glucose-1-phosphate adenylyltransferase (EC:2.7.7.27); K00975 glucose-1-phosphate adenylyltransferase [EC:2.7.7.27]
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
Glucose-1-phosphate adenylyltransferase n=2 Tax=Rhizobium etli RepID=GLGC_RHIE6 rbh
SCNpilot_expt_1000_bf_scaffold_2444_curated_2
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1129..2571
DNA (1443bp) protein (481aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
glgA; glycogen synthase (EC:2.4.1.21); K00703 starch synthase [EC:2.4.1.21]
Glycogen synthase n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UB66_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2444_curated_3
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2576..4204
DNA (1629bp) protein (543aa)
Phosphoglucomutase {ECO:0000313|EMBL:CAC17473.1}; EC=5.4.2.2 {ECO:0000313|EMBL:CAC17473.1};; TaxID=398 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici.;"
Phosphoglucomutase n=1 Tax=Rhizobium tropici RepID=Q9EUT4_RHITR
pgm; phosphoglucomutase
SCNpilot_expt_1000_bf_scaffold_2444_curated_4
Bordetella pertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(4075..5586)
DNA (1512bp) protein (504aa)
50S ribosomal protein L18 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3C4B2
Uncharacterised protein {ECO:0000313|EMBL:CRE17104.1}; TaxID=520 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella pertussis.;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_5
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5856..6188
DNA (333bp) protein (111aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
glgX; glycogen debranching enzyme GlgX; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching enzyme GlgX n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q186_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2444_curated_6
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6234..6722
DNA (489bp) protein (163aa)
MaoC domain protein dehydratase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UD45_SINMW
dehydratase
MaoC domain protein dehydratase {ECO:0000313|EMBL:ABR61575.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_7
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7000..7563)
DNA (564bp) protein (188aa)
sarcosine oxidase subunit gamma; K00305 sarcosine oxidase, subunit gamma [EC:1.5.3.1]
Sarcosine oxidase, gamma subunit family n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UD49_SINMW
Sarcosine oxidase, gamma subunit family {ECO:0000313|EMBL:ABR61579.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7556..10549)
DNA (2994bp) protein (998aa)
Putative sarcosine oxidase alpha subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UB71_9RHIZ
Sarcosine oxidase, alpha subunit {ECO:0000313|EMBL:AHK42436.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
sarcosine oxidase subunit alpha
SCNpilot_expt_1000_bf_scaffold_2444_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10546..10887)
DNA (342bp) protein (114aa)
soxD; sarcosine oxidase subunit delta (EC:1.5.3.1)
Sarcosine oxidase, delta subunit {ECO:0000313|EMBL:AFL53845.1}; EC=1.5.3.1 {ECO:0000313|EMBL:AFL53845.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Sarcosine oxidase, delta subunit n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XD89_RHIFR
SCNpilot_expt_1000_bf_scaffold_2444_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10903..11310)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Rhizobium leguminosarum RepID=UPI0003646DC3
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS57903.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_11
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11310..12563)
DNA (1254bp) protein (418aa)
sarcosine oxidase beta subunit (EC:1.5.3.1); K00303 sarcosine oxidase, subunit beta [EC:1.5.3.1]
Sarcosine oxidase beta subunit family protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HFM5_RHIRD
Sarcosine oxidase, beta subunit family, heterotetrameric form {ECO:0000313|EMBL:CDN94051.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12857..13084
DNA (228bp) protein (76aa)
30S ribosomal protein S21 n=1 Tax=Nitratireductor indicus C115 RepID=K2NSW8_9RHIZ
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_13
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13228..14103
DNA (876bp) protein (292aa)
O-linked GlcNAc transferase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q192_9RHIZ
O-linked GlcNAc transferase {ECO:0000313|EMBL:CDN55394.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
O-linked GlcNAc transferase
SCNpilot_expt_1000_bf_scaffold_2444_curated_14
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14387..14611)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3MIU4_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KDP76667.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_15
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14825..15076)
DNA (252bp) protein (84aa)
membrane protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003776F84
Uncharacterized protein {ECO:0000313|EMBL:CDM58086.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
transglycosylase
SCNpilot_expt_1000_bf_scaffold_2444_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15152..15895)
DNA (744bp) protein (248aa)
Uncharacterized protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UB88_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80541.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2444_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16065..17414)
DNA (1350bp) protein (450aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6U4A1_9RHIZ
Diguanylate cyclase {ECO:0000313|EMBL:EYR80542.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sensory box/GGDEF family protein
SCNpilot_expt_1000_bf_scaffold_2444_curated_18
unknown

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comp(17411..18091)
DNA (681bp) protein (227aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2444_curated_19
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18637..19176
DNA (540bp) protein (180aa)
Putative transmembrane transporter component n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MBQ4_RHIL3
Uncharacterized protein {ECO:0000313|EMBL:CDM59262.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
transmembrane transporter component
SCNpilot_expt_1000_bf_scaffold_2444_curated_20
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19207..20775
DNA (1569bp) protein (523aa)
C4-dicarboxylate ABC transporter n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000360D236
Putative TRAP transporter large permease protein HI0050 {ECO:0000313|EMBL:CDM59263.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
TRAP family transmembrane transporter protein
SCNpilot_expt_1000_bf_scaffold_2444_curated_21
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20861..21967)
DNA (1107bp) protein (369aa)
periplasmic mannitol-binding protein (EC:2.1.2.1)
Putative periplasmic mannitol-binding protein putative Trap-T transport system, dctP subunit n=1 Tax=Rhizobium sp. RepID=L0NHE0_RHISP
Putative periplasmic mannitol-binding protein putative Trap-T transport system, dctP subunit {ECO:0000313|EMBL:CCF20500.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22277..23089
DNA (813bp) protein (271aa)
Peptidase C26 n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZQ72_RHILW
peptidase C26; K07010 putative glutamine amidotransferase
Peptidase C26 {ECO:0000313|EMBL:ACI56642.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23035..23439)
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C7I2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80546.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
SCNpilot_expt_1000_bf_scaffold_2444_curated_24
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(23513..23734)
DNA (222bp) protein (74aa)
Uncharacterized protein (Fragment) n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RJK8_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EFH12492.1}; Flags: Fragment;; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
major facilitator superfamily transporter
SCNpilot_expt_1000_bf_scaffold_2444_curated_25
unknown

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24033..24713
DNA (681bp) protein (227aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2444_curated_26
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24662..25102)
DNA (441bp) protein (147aa)
membrane protein n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI00037FE55D
Membrane protein {ECO:0000313|EMBL:KJF66596.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2444_curated_27
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25269..26234)
DNA (966bp) protein (322aa)
Lactate dehydrogenase-like oxidoreductase n=1 Tax=Rhizobium sp. AP16 RepID=J2WA06_9RHIZ
Lactate dehydrogenase-like oxidoreductase {ECO:0000313|EMBL:EJK79653.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
2-hydroxyacid dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2444_curated_28
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26354..27376)
DNA (1023bp) protein (341aa)
LacI family transcriptional regulator n=1 Tax=Rhizobium sp. CCGE 510 RepID=J5PZI8_9RHIZ
LacI family transcriptional regulator {ECO:0000313|EMBL:EJT04058.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
LacI family HTH-type transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_2444_curated_29
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27501..28010)
DNA (510bp) protein (170aa)
Transcriptional regulator n=1 Tax=Rhizobium sp. CF142 RepID=J2L6K7_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EJJ29132.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
MarR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2444_curated_30
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28096..28887
DNA (792bp) protein (264aa)
creatinine amidohydrolase; K01470 creatinine amidohydrolase [EC:3.5.2.10]
Creatinine amidohydrolase {ECO:0000313|EMBL:CDH87017.1}; EC=3.5.2.10 {ECO:0000313|EMBL:CDH87017.1};; TaxID=1401243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti RU11/001.;"
Creatininase n=7 Tax=Rhizobium meliloti RepID=F6BW24_SINMB
Displaying items 1-30 of 72 in total

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